Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1742251..1742519 | Replicon | chromosome |
| Accession | NZ_CP031355 | ||
| Organism | Escherichia coli O145 strain RM8995-C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1742289..1742392 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1742251..1742519 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXE49_RS08880 | 1739408..1740847 | + | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DXE49_RS08885 | 1740965..1741201 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DXE49_RS08890 | 1741306..1741497 | + | 192 | WP_001313035.1 | YebW family protein | - |
| DXE49_RS08895 | 1741498..1742154 | - | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| - | 1742251..1742519 | + | 269 | - | - | Antitoxin |
| - | 1742289..1742392 | - | 104 | - | - | Toxin |
| DXE49_RS08900 | 1742549..1742890 | - | 342 | WP_000976475.1 | YebY family protein | - |
| DXE49_RS08905 | 1742903..1743775 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| DXE49_RS08910 | 1743779..1744153 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| DXE49_RS08915 | 1744292..1744522 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DXE49_RS08920 | 1744624..1745280 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| DXE49_RS08925 | 1745304..1745966 | + | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109122 NZ_CP031355:c1742392-1742289 [Escherichia coli O145]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT109122 NZ_CP031355:1742251-1742519 [Escherichia coli O145]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
