Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2432731..2432999 | Replicon | chromosome |
| Accession | NZ_CP031353 | ||
| Organism | Escherichia coli O145 strain RM9154-C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2432858..2432961 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2432731..2432999 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXE50_RS13765 | 2429284..2429946 | - | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
| DXE50_RS13770 | 2429970..2430626 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| DXE50_RS13775 | 2430728..2430958 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DXE50_RS13780 | 2431097..2431471 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| DXE50_RS13785 | 2431475..2432347 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| DXE50_RS13790 | 2432360..2432701 | + | 342 | WP_000976475.1 | YebY family protein | - |
| - | 2432731..2432999 | - | 269 | - | - | Antitoxin |
| - | 2432858..2432961 | + | 104 | - | - | Toxin |
| DXE50_RS13795 | 2433096..2433752 | + | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| DXE50_RS13800 | 2433753..2433944 | - | 192 | WP_001313035.1 | YebW family protein | - |
| DXE50_RS13805 | 2434049..2434285 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DXE50_RS13810 | 2434403..2435842 | - | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T109090 NZ_CP031353:2432858-2432961 [Escherichia coli O145]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT109090 NZ_CP031353:c2432999-2432731 [Escherichia coli O145]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
