Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2333899..2334167 Replicon chromosome
Accession NZ_CP031349
Organism Escherichia coli O145 strain RM9467-C1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2333937..2334040 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2333899..2334167 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DXE51_RS12010 2331056..2332495 + 1440 WP_024221588.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
DXE51_RS12015 2332613..2332849 + 237 WP_001295499.1 DUF1480 family protein -
DXE51_RS12020 2332954..2333145 + 192 WP_001313035.1 YebW family protein -
DXE51_RS12025 2333146..2333802 - 657 WP_000812714.1 protein-serine/threonine phosphatase -
- 2333899..2334167 + 269 - - Antitoxin
- 2333937..2334040 - 104 - - Toxin
DXE51_RS12030 2334197..2334538 - 342 WP_000976475.1 YebY family protein -
DXE51_RS12035 2334551..2335423 - 873 WP_000879330.1 copper homeostasis membrane protein CopD -
DXE51_RS12040 2335427..2335801 - 375 WP_000168738.1 CopC domain-containing protein YobA -
DXE51_RS12045 2335940..2336170 + 231 WP_000916763.1 DNA polymerase III subunit theta -
DXE51_RS12050 2336272..2336928 + 657 WP_000011656.1 carbon-nitrogen hydrolase family protein -
DXE51_RS12055 2336952..2337614 + 663 WP_000944252.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T109059 NZ_CP031349:c2334040-2333937 [Escherichia coli O145]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT109059 NZ_CP031349:2333899-2334167 [Escherichia coli O145]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References