Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2333866..2334134 Replicon chromosome
Accession NZ_CP031347
Organism Escherichia coli O145 strain RM9873-C1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2333904..2334007 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2333866..2334134 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DXE52_RS12010 2331023..2332462 + 1440 WP_024221588.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
DXE52_RS12015 2332580..2332816 + 237 WP_001295499.1 DUF1480 family protein -
DXE52_RS12020 2332921..2333112 + 192 WP_001313035.1 YebW family protein -
DXE52_RS12025 2333113..2333769 - 657 WP_000812714.1 protein-serine/threonine phosphatase -
- 2333866..2334134 + 269 - - Antitoxin
- 2333904..2334007 - 104 - - Toxin
DXE52_RS12030 2334164..2334505 - 342 WP_000976475.1 YebY family protein -
DXE52_RS12035 2334518..2335390 - 873 WP_000879330.1 copper homeostasis membrane protein CopD -
DXE52_RS12040 2335394..2335768 - 375 WP_000168738.1 CopC domain-containing protein YobA -
DXE52_RS12045 2335907..2336137 + 231 WP_000916763.1 DNA polymerase III subunit theta -
DXE52_RS12050 2336239..2336895 + 657 WP_000011656.1 carbon-nitrogen hydrolase family protein -
DXE52_RS12055 2336919..2337581 + 663 WP_000944252.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T109030 NZ_CP031347:c2334007-2333904 [Escherichia coli O145]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT109030 NZ_CP031347:2333866-2334134 [Escherichia coli O145]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References