Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2334144..2334412 Replicon chromosome
Accession NZ_CP031341
Organism Escherichia coli O145 strain RM12275-C1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2334182..2334285 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2334144..2334412 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DXE55_RS12060 2331301..2332740 + 1440 WP_024221588.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
DXE55_RS12065 2332858..2333094 + 237 WP_001295499.1 DUF1480 family protein -
DXE55_RS12070 2333199..2333390 + 192 WP_001313035.1 YebW family protein -
DXE55_RS12075 2333391..2334047 - 657 WP_000812714.1 protein-serine/threonine phosphatase -
- 2334144..2334412 + 269 - - Antitoxin
- 2334182..2334285 - 104 - - Toxin
DXE55_RS12080 2334442..2334783 - 342 WP_000976475.1 YebY family protein -
DXE55_RS12085 2334796..2335668 - 873 WP_000879330.1 copper homeostasis membrane protein CopD -
DXE55_RS12090 2335672..2336046 - 375 WP_000168738.1 CopC domain-containing protein YobA -
DXE55_RS12095 2336185..2336415 + 231 WP_000916763.1 DNA polymerase III subunit theta -
DXE55_RS12100 2336517..2337173 + 657 WP_000011656.1 carbon-nitrogen hydrolase family protein -
DXE55_RS12105 2337197..2337859 + 663 WP_000944252.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T108947 NZ_CP031341:c2334285-2334182 [Escherichia coli O145]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT108947 NZ_CP031341:2334144-2334412 [Escherichia coli O145]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References