Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1860407..1860554 | Replicon | chromosome |
| Accession | NZ_CP031257 | ||
| Organism | Klebsiella quasipneumoniae strain L22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1860448..1860550 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1860407..1860554 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV026_RS09260 | 1855542..1857602 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| DV026_RS09265 | 1857606..1858265 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| DV026_RS09270 | 1858344..1858574 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DV026_RS09275 | 1858687..1859061 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| DV026_RS09280 | 1859065..1859934 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| DV026_RS09285 | 1859951..1860289 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1860407..1860554 | - | 148 | - | - | Antitoxin |
| - | 1860448..1860550 | + | 103 | - | - | Toxin |
| DV026_RS28790 | 1860938..1861081 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| DV026_RS09295 | 1861185..1862153 | - | 969 | WP_049116909.1 | VirK/YbjX family protein | - |
| DV026_RS09300 | 1862310..1862963 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| DV026_RS09305 | 1862960..1863151 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DV026_RS09310 | 1863249..1863488 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DV026_RS09315 | 1863605..1865038 | - | 1434 | WP_117984913.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T108771 NZ_CP031257:1860448-1860550 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT108771 NZ_CP031257:c1860554-1860407 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
