Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-YefM
Location 1922223..1922761 Replicon chromosome
Accession NZ_CP031229
Organism Ornithinimicrobium sp. AMA3305

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DV701_RS08765 Protein ID WP_114927975.1
Coordinates 1922486..1922761 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag DV701_RS08760 Protein ID WP_114927974.1
Coordinates 1922223..1922489 (+) Length 89 a.a.

Genomic Context

DV701_RS08730DV701_RS18415DV701_RS18420DV701_RS08755DV701_RS08760DV701_RS08765DV701_RS18425DV701_RS08780DV701_RS08785DV701_RS08790DV701_RS08720DV701_RS08735DV701_RS08740DV701_RS08770
Location: 1918387..1919535 (1149 bp)
Type: Others
Protein ID: WP_162802924.1
Location: 1920300..1920788 (489 bp)
Type: Others
Protein ID: WP_202863672.1
Location: 1920795..1921052 (258 bp)
Type: Others
Protein ID: WP_202863715.1
Location: 1921289..1921906 (618 bp)
Type: Others
Protein ID: WP_162802925.1
Location: 1922223..1922489 (267 bp)
Type: Antitoxin
Protein ID: WP_114927974.1
Location: 1922486..1922761 (276 bp)
Type: Toxin
Protein ID: WP_114927975.1
Location: 1923775..1924143 (369 bp)
Type: Others
Protein ID: WP_202863673.1
Location: 1924313..1924845 (533 bp)
Type: Others
Protein ID: Protein_1723
Location: 1924966..1926327 (1362 bp)
Type: Others
Protein ID: WP_114930941.1
Location: 1926342..1927487 (1146 bp)
Type: Others
Protein ID: WP_114927977.1
Location: 1917452..1918027 (576 bp)
Type: Others
Protein ID: WP_114927969.1
Location: 1919508..1919723 (216 bp)
Type: Others
Protein ID: WP_114927971.1
Location: 1919720..1919968 (249 bp)
Type: Others
Protein ID: WP_114927972.1
Location: 1923036..1923524 (489 bp)
Type: Others
Protein ID: WP_114927976.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DV701_RS087201917452..1918027-576WP_114927969.1YggS family pyridoxal phosphate-dependent enzyme-
DV701_RS087301918387..1919535+1149WP_162802924.1ATP-binding protein-
DV701_RS087351919508..1919723-216WP_114927971.1toxin-
DV701_RS087401919720..1919968-249WP_114927972.1ribbon-helix-helix protein, CopG family-
DV701_RS184151920300..1920788+489WP_202863672.1transposase-
DV701_RS184201920795..1921052+258WP_202863715.1transposase-
DV701_RS087551921289..1921906+618WP_162802925.1hypothetical protein-
DV701_RS087601922223..1922489+267WP_114927974.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
DV701_RS087651922486..1922761+276WP_114927975.1type II toxin-antitoxin system RelE/ParE family toxinToxin
DV701_RS087701923036..1923524-489WP_114927976.1hypothetical protein-
DV701_RS184251923775..1924143+369WP_202863673.1hypothetical protein-
DV701_RS087801924313..1924845+533Protein_1723response regulator transcription factor-
DV701_RS087851924966..1926327+1362WP_114930941.1cystathionine beta-synthase-
DV701_RS087901926342..1927487+1146WP_114927977.1cystathionine gamma-synthase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(34-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10246.86 Da        Isoelectric Point: 11.5026

>T108637 WP_114927975.1 NZ_CP031229:1922486-1922761 [Ornithinimicrobium sp. AMA3305]
VTLPFELVLTPPATRAIQRGLPESVAAAVVEFFTGALIDNPQRVGKPLRGELAGIRSARRGTYRVLYRINEQAREVVVLR
VEHRRDVYGRH

Download         Length: 276 bp

>T108637 NZ_CP031229:1922486-1922761 [Ornithinimicrobium sp. AMA3305]
GTGACGCTCCCTTTCGAGCTTGTCCTGACCCCCCCGGCTACCCGGGCGATCCAGCGGGGTCTACCCGAGTCCGTGGCTGC
GGCAGTCGTCGAGTTTTTCACCGGGGCCCTCATCGACAACCCCCAGCGAGTGGGCAAGCCCCTTCGCGGCGAGCTCGCCG
GCATCCGTTCCGCACGCCGGGGGACCTATCGAGTCCTCTACCGGATCAACGAGCAGGCTCGCGAAGTCGTCGTGCTGCGC
GTCGAGCACCGTCGCGACGTATACGGTCGCCACTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9651.79 Da        Isoelectric Point: 4.2591

>AT108637 WP_114927974.1 NZ_CP031229:1922223-1922489 [Ornithinimicrobium sp. AMA3305]
MSIESLREVRDHFSDVVDRVQREHERVTVTRNGKAAAVILSPEDLAELEETLAVLSDPEALADIREADLAYQAGDVVRGA
DAVRALLP

Download         Length: 267 bp

>AT108637 NZ_CP031229:1922223-1922489 [Ornithinimicrobium sp. AMA3305]
ATGAGCATCGAGTCCCTGCGCGAGGTCCGCGATCACTTCAGCGACGTTGTCGACCGAGTGCAGCGCGAGCACGAGCGGGT
CACGGTGACGCGCAACGGCAAGGCAGCAGCGGTCATCCTCAGCCCGGAAGACCTGGCCGAGCTCGAAGAGACCCTGGCCG
TCCTCAGTGACCCTGAGGCGCTGGCCGACATCCGCGAAGCCGACCTCGCATACCAGGCAGGAGACGTGGTCCGCGGAGCA
GATGCGGTCCGGGCATTGCTCCCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References