Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 3643999..3644545 Replicon chromosome
Accession NZ_CP031123
Organism Providencia huaxiensis strain WCHPr000369

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CYG50_RS18565 Protein ID WP_102140618.1
Coordinates 3644264..3644545 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CYG50_RS18560 Protein ID WP_102140619.1
Coordinates 3643999..3644283 (+) Length 95 a.a.

Genomic Context

CYG50_RS18560CYG50_RS18565CYG50_RS18570CYG50_RS18535CYG50_RS18540CYG50_RS18545CYG50_RS18550CYG50_RS18555CYG50_RS18575CYG50_RS18580CYG50_RS18585
Location: 3643999..3644283 (285 bp)
Type: Antitoxin
Protein ID: WP_102140619.1
Location: 3644264..3644545 (282 bp)
Type: Toxin
Protein ID: WP_102140618.1
Location: 3644905..3645636 (732 bp)
Type: Others
Protein ID: WP_102140617.1
Location: 3639074..3640051 (978 bp)
Type: Others
Protein ID: WP_004265237.1
Location: 3640457..3641401 (945 bp)
Type: Others
Protein ID: WP_102140623.1
Location: 3641398..3642039 (642 bp)
Type: Others
Protein ID: WP_102140622.1
Location: 3642277..3643029 (753 bp)
Type: Others
Protein ID: WP_004907010.1
Location: 3643256..3643837 (582 bp)
Type: Others
Protein ID: WP_102140620.1
Location: 3645669..3645887 (219 bp)
Type: Others
Protein ID: WP_102140616.1
Location: 3645959..3647056 (1098 bp)
Type: Others
Protein ID: WP_116068830.1
Location: 3647053..3647499 (447 bp)
Type: Others
Protein ID: WP_102140831.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CYG50_RS185353639074..3640051-978WP_004265237.16-phosphofructokinase-
CYG50_RS185403640457..3641401-945WP_102140623.1phosphatidate cytidylyltransferase-
CYG50_RS185453641398..3642039-642WP_102140622.11-acyl-sn-glycerol-3-phosphate acyltransferase-
CYG50_RS185503642277..3643029-753WP_004907010.1M48 family metallopeptidase-
CYG50_RS185553643256..3643837-582WP_102140620.1HutD family protein-
CYG50_RS185603643999..3644283+285WP_102140619.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
CYG50_RS185653644264..3644545+282WP_102140618.1type II toxin-antitoxin system YafQ family toxinToxin
CYG50_RS185703644905..3645636+732WP_102140617.1hypothetical protein-
CYG50_RS185753645669..3645887-219WP_102140616.1ogr/Delta-like zinc finger family protein-
CYG50_RS185803645959..3647056-1098WP_116068830.1phage late control D family protein-
CYG50_RS185853647053..3647499-447WP_102140831.1phage tail protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-92)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(9-84)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10908.76 Da        Isoelectric Point: 8.8589

>T108498 WP_102140618.1 NZ_CP031123:3644264-3644545 [Providencia huaxiensis]
MLKIRVKSQFKKDLKKSLSDKKRNTQLLKELIDNHLCITGSVPAEYLPHPLKGNWRPCYECHIQPDFLLIWDINYQTNEI
ILVRCGSHSELFG

Download         Length: 282 bp

>T108498 NZ_CP031123:3644264-3644545 [Providencia huaxiensis]
ATGCTGAAAATTCGCGTTAAATCCCAATTCAAAAAAGACTTAAAAAAGTCGTTATCTGACAAAAAAAGAAATACTCAGCT
ATTAAAAGAGTTAATCGATAACCACCTATGCATTACTGGCTCTGTTCCAGCAGAATATTTGCCTCATCCCTTAAAAGGAA
ACTGGAGACCTTGCTATGAATGTCACATACAACCCGATTTTTTATTAATTTGGGATATAAACTACCAAACCAATGAAATC
ATATTAGTTCGCTGTGGTTCTCATTCTGAATTATTTGGCTAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10420.71 Da        Isoelectric Point: 4.6412

>AT108498 WP_102140619.1 NZ_CP031123:3643999-3644283 [Providencia huaxiensis]
MASTQHKTDIVRARIEPKVRENAEAVLSELGISMSDAIRIFVKQISLRQAFPIELKTPNSITLEAINAPTTDETFDSAED
LFSQVSKSDAENSR

Download         Length: 285 bp

>AT108498 NZ_CP031123:3643999-3644283 [Providencia huaxiensis]
ATGGCCAGTACTCAACATAAAACAGATATTGTCAGAGCCAGAATTGAGCCTAAAGTCAGGGAAAATGCTGAAGCAGTGTT
ATCTGAATTAGGGATTAGCATGTCTGATGCTATTCGTATTTTCGTCAAGCAAATATCATTGCGACAAGCTTTTCCTATTG
AGTTAAAAACACCAAACTCAATTACATTAGAAGCTATTAATGCACCAACTACAGACGAAACATTTGACTCTGCTGAAGAT
TTATTTAGCCAAGTGAGCAAGTCCGATGCTGAAAATTCGCGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References