Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 86555..87198 Replicon plasmid pAMSC2
Accession NZ_CP031107
Organism Escherichia coli strain AMSCJX02

Toxin (Protein)


Gene name vagD Uniprot ID B1LRW4
Locus tag DUT84_RS26130 Protein ID WP_001044768.1
Coordinates 86782..87198 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID D2WFK3
Locus tag DUT84_RS26125 Protein ID WP_001261287.1
Coordinates 86555..86785 (+) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DUT84_RS26080 81989..82162 - 174 Protein_92 RepB family plasmid replication initiator protein -
DUT84_RS26085 82862..83644 - 783 WP_001513526.1 site-specific integrase -
DUT84_RS26090 83645..83950 - 306 WP_001159871.1 type II toxin-antitoxin system toxin CcdB -
DUT84_RS26095 83952..84170 - 219 WP_000813630.1 type II toxin-antitoxin system antitoxin CcdA -
DUT84_RS26110 84726..85415 + 690 WP_001513525.1 helix-turn-helix domain-containing protein -
DUT84_RS26115 85447..86136 - 690 WP_001513524.1 RES family NAD+ phosphorylase -
DUT84_RS26125 86555..86785 + 231 WP_001261287.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
DUT84_RS26130 86782..87198 + 417 WP_001044768.1 type II toxin-antitoxin system VapC family toxin Toxin
DUT84_RS26135 87360..89498 - 2139 WP_001513523.1 AAA family ATPase -
DUT84_RS26140 89885..90115 + 231 WP_001261286.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
DUT84_RS26145 90112..90528 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin -
DUT84_RS26150 90603..92168 + 1566 WP_001128474.1 AAA family ATPase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid sitABCD iutA / iucD / iucC / iucB / iucA / iroB / iroC / iroD / iroE / iroN / vat 1..203856 203856


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-129)

Antitoxin

SpoVT-AbrB domain

(7-52)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15197.66 Da        Isoelectric Point: 7.7805

>T108472 WP_001044768.1 NZ_CP031107:86782-87198 [Escherichia coli]
VNKTYMLDTCICSFIMREQPEAVLKRLEQAVLRGHRIVVSAITYSEMRFGATGPKASPRHVQLVDEFCARLDAILPWDRA
AVDATTKIKVALRLAGTPIGPNDTAIAGHAIAAGAILVTNNTREFERVPDLVLEDWVK

Download         Length: 417 bp

>T108472 NZ_CP031107:86782-87198 [Escherichia coli]
GTGAACAAGACTTATATGCTTGATACCTGTATCTGCTCGTTCATCATGCGTGAACAGCCAGAAGCCGTCCTGAAGCGTCT
GGAGCAGGCGGTGCTACGCGGCCACCGTATAGTGGTCTCGGCCATCACCTACTCTGAAATGCGCTTCGGGGCTACCGGCC
CAAAGGCCTCACCACGTCACGTCCAACTGGTCGATGAATTCTGCGCCCGCCTCGATGCCATCCTGCCCTGGGATCGCGCC
GCAGTAGATGCCACCACGAAGATTAAAGTGGCACTGCGGCTGGCCGGGACGCCGATCGGCCCGAACGACACGGCGATTGC
CGGGCACGCCATCGCCGCCGGGGCGATACTGGTGACGAATAATACAAGAGAATTTGAGCGGGTGCCTGACCTGGTGCTGG
AAGACTGGGTGAAGTAA

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8815.90 Da        Isoelectric Point: 4.3775

>AT108472 WP_001261287.1 NZ_CP031107:86555-86785 [Escherichia coli]
MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWGSFLEYEKADPDFMAEREDVVSDEGRFNL

Download         Length: 231 bp

>AT108472 NZ_CP031107:86555-86785 [Escherichia coli]
ATGAGAACCGTATCGATATTTAAAAATGGCAACAACCGCGCCATCCGTCTGCCTCGTGATCTGGATTTTGAGGGGGTGAG
CGAGCTCGAGATCGTCCGGGAAGGGGACAGCATCATCCTGCGCCCCGTCCGGCCAACCTGGGGCTCATTCCTGGAGTACG
AAAAAGCCGATCCAGATTTTATGGCGGAGCGCGAGGATGTTGTCAGCGACGAAGGGCGATTTAACCTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A606Q844

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QFC4

References