Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 263144..263415 | Replicon | chromosome |
| Accession | NZ_CP031105 | ||
| Organism | Escherichia coli strain AMSCJX02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 263182..263285 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 263144..263415 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DUT84_RS01380 | 260301..261740 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DUT84_RS01385 | 261858..262094 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DUT84_RS01390 | 262199..262390 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DUT84_RS01395 | 262391..263047 | - | 657 | WP_000812710.1 | protein-serine/threonine phosphatase | - |
| - | 263144..263415 | + | 272 | - | - | Antitoxin |
| - | 263182..263285 | - | 104 | - | - | Toxin |
| DUT84_RS01400 | 263443..263784 | - | 342 | WP_000976472.1 | YebY family protein | - |
| DUT84_RS01405 | 263797..264669 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| DUT84_RS01410 | 264673..265047 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| DUT84_RS01415 | 265186..265416 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DUT84_RS01420 | 265518..266174 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DUT84_RS01425 | 266198..266860 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T108434 NZ_CP031105:c263285-263182 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT108434 NZ_CP031105:263144-263415 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
