Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 763307..763478 | Replicon | chromosome |
| Accession | NZ_CP031104 | ||
| Organism | Leclercia sp. W6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 763374..763476 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 763307..763478 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVA43_RS03745 | 759823..760485 | - | 663 | WP_103822371.1 | exodeoxyribonuclease X | - |
| DVA43_RS03750 | 760510..761166 | - | 657 | WP_114317069.1 | carbon-nitrogen hydrolase family protein | - |
| DVA43_RS03755 | 761274..761504 | - | 231 | WP_103180048.1 | DNA polymerase III subunit theta | - |
| DVA43_RS03760 | 761641..762006 | + | 366 | WP_114314616.1 | CopC domain-containing protein YobA | - |
| DVA43_RS03765 | 762008..762880 | + | 873 | WP_114314617.1 | copper homeostasis membrane protein CopD | - |
| DVA43_RS03770 | 762895..763233 | + | 339 | WP_103180045.1 | YebY family protein | - |
| - | 763307..763478 | - | 172 | - | - | Antitoxin |
| - | 763374..763476 | + | 103 | - | - | Toxin |
| DVA43_RS03775 | 763554..764639 | - | 1086 | WP_114314618.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| DVA43_RS03780 | 764608..764880 | - | 273 | WP_114314619.1 | excisionase | - |
| DVA43_RS03785 | 764945..765184 | - | 240 | WP_114314620.1 | DUF4060 family protein | - |
| DVA43_RS03790 | 765171..765878 | - | 708 | WP_114314621.1 | hypothetical protein | - |
| DVA43_RS03795 | 765913..767028 | - | 1116 | WP_114314622.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 756584..801169 | 44585 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T108416 NZ_CP031104:763374-763476 [Leclercia sp. W6]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 172 bp
>AT108416 NZ_CP031104:c763478-763307 [Leclercia sp. W6]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTG
AAAAAAAGCGTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTG
AAAAAAAGCGTG
