Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1895320..1895501 | Replicon | chromosome |
| Accession | NZ_CP031101 | ||
| Organism | Leclercia sp. W17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1895387..1895489 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1895320..1895501 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVA44_RS09265 | 1891836..1892498 | - | 663 | WP_103822371.1 | exodeoxyribonuclease X | - |
| DVA44_RS09270 | 1892523..1893179 | - | 657 | WP_114388393.1 | carbon-nitrogen hydrolase family protein | - |
| DVA44_RS09275 | 1893287..1893517 | - | 231 | WP_103180048.1 | DNA polymerase III subunit theta | - |
| DVA44_RS09280 | 1893654..1894019 | + | 366 | WP_114314616.1 | CopC domain-containing protein YobA | - |
| DVA44_RS09285 | 1894021..1894893 | + | 873 | WP_114386413.1 | copper homeostasis membrane protein CopD | - |
| DVA44_RS09290 | 1894908..1895246 | + | 339 | WP_103822368.1 | YebY family protein | - |
| - | 1895320..1895501 | - | 182 | - | - | Antitoxin |
| - | 1895387..1895489 | + | 103 | - | - | Toxin |
| DVA44_RS09295 | 1895646..1896512 | - | 867 | WP_114388394.1 | VirK/YbjX family protein | - |
| DVA44_RS09300 | 1896771..1897415 | + | 645 | WP_114386415.1 | protein-serine/threonine phosphatase | - |
| DVA44_RS09305 | 1897416..1897607 | - | 192 | WP_039030805.1 | YebW family protein | - |
| DVA44_RS09310 | 1897712..1897951 | - | 240 | WP_103181101.1 | YebV family protein | - |
| DVA44_RS09315 | 1898055..1899497 | - | 1443 | WP_114386417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T108401 NZ_CP031101:1895387-1895489 [Leclercia sp. W17]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 182 bp
>AT108401 NZ_CP031101:c1895501-1895320 [Leclercia sp. W17]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAA
AAGTGGCCTGAAAAAAAGCGTG
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAA
AAGTGGCCTGAAAAAAAGCGTG
