Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pemIK/MazF(toxin)
Location 239262..239904 Replicon chromosome
Accession NZ_CP031068
Organism Bacillus sp. JAS24-2

Toxin (Protein)


Gene name pemK Uniprot ID R8I8B8
Locus tag DN407_RS01370 Protein ID WP_000635965.1
Coordinates 239554..239904 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name pemI Uniprot ID R8I8H2
Locus tag DN407_RS01365 Protein ID WP_000004570.1
Coordinates 239262..239549 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DN407_RS01340 234579..235541 + 963 WP_149215949.1 UV DNA damage repair endonuclease UvsE -
DN407_RS01345 235534..236106 - 573 WP_000908524.1 rhomboid family intramembrane serine protease -
DN407_RS01350 236200..236559 + 360 WP_000583417.1 holo-ACP synthase -
DN407_RS01355 236716..237666 + 951 WP_002004297.1 outer membrane lipoprotein carrier protein LolA -
DN407_RS01360 237784..238953 + 1170 WP_000390617.1 alanine racemase -
DN407_RS01365 239262..239549 + 288 WP_000004570.1 antitoxin EndoAI Antitoxin
DN407_RS01370 239554..239904 + 351 WP_000635965.1 type II toxin-antitoxin system endoribonuclease NdoA Toxin
DN407_RS01375 239972..242140 + 2169 WP_000426236.1 RNA-binding transcriptional accessory protein -
DN407_RS01380 242198..242314 - 117 WP_001143642.1 cortex morphogenetic protein CmpA -
DN407_RS01385 242510..242968 + 459 WP_000344235.1 SprT family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(4-111)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12948.04 Da        Isoelectric Point: 5.7168

>T108384 WP_000635965.1 NZ_CP031068:239554-239904 [Bacillus sp. JAS24-2]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKKYGFERDSVILLEQI
RTIDKQRLTDKITHLDEVMMSRVDEALQISLGLIDF

Download         Length: 351 bp

>T108384 NZ_CP031068:239554-239904 [Bacillus sp. JAS24-2]
TTGATTGTAAAACGCGGCGACGTGTATTTTGCAGACCTTTCCCCAGTTGTTGGTTCTGAGCAAGGAGGCGTTCGTCCGGT
TCTTGTCATTCAAAATGACATCGGAAATCGTTTTAGTCCAACGGTGATTGTAGCGGCTATTACTGCACAGATTCAAAAAG
CGAAATTACCCACTCATGTGGAAATTGATGCGAAAAAGTATGGTTTTGAGAGAGATTCTGTTATTTTACTTGAGCAGATT
CGAACAATCGATAAGCAACGCTTAACGGACAAAATCACTCATTTGGATGAAGTGATGATGAGTCGTGTAGATGAAGCGTT
ACAAATTAGTTTAGGACTAATAGATTTTTAA

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10780.36 Da        Isoelectric Point: 8.9605

>AT108384 WP_000004570.1 NZ_CP031068:239262-239549 [Bacillus sp. JAS24-2]
VSESSVTTEIVVRLPKQMVTELDGIGKQENKNRHELICQATQLLLRQHKTKKRYQHESMRRGYIEMGKINLGIASEAFLA
EYEAAHTVERLVSGG

Download         Length: 288 bp

>AT108384 NZ_CP031068:239262-239549 [Bacillus sp. JAS24-2]
GTGTCCGAATCAAGTGTAACTACTGAAATCGTGGTTCGGTTGCCAAAGCAAATGGTAACGGAATTGGACGGAATTGGAAA
ACAAGAGAATAAGAATCGCCATGAACTAATTTGCCAGGCAACACAATTGTTATTGCGTCAACATAAGACGAAGAAACGCT
ACCAACATGAATCAATGCGACGTGGGTACATTGAAATGGGAAAAATTAATCTTGGTATTGCATCTGAAGCTTTCTTAGCA
GAGTATGAAGCAGCTCATACAGTAGAACGCTTAGTTAGCGGGGGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A366G118

Antitoxin

Source ID Structure
AlphaFold DB A0A366FY90

References