Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1948831..1948975 | Replicon | chromosome |
| Accession | NZ_CP031061 | ||
| Organism | Klebsiella variicola strain GN02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1948867..1948969 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1948831..1948975 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DUZ89_RS09380 | 1943961..1946021 | + | 2061 | WP_185185875.1 | oligopeptidase B | - |
| DUZ89_RS09385 | 1946025..1946684 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| DUZ89_RS09390 | 1946763..1946993 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| DUZ89_RS09395 | 1947107..1947481 | + | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| DUZ89_RS09400 | 1947485..1948354 | + | 870 | WP_185185876.1 | copper homeostasis membrane protein CopD | - |
| DUZ89_RS09405 | 1948371..1948709 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1948831..1948975 | - | 145 | - | - | Antitoxin |
| - | 1948867..1948969 | + | 103 | - | - | Toxin |
| DUZ89_RS09410 | 1949354..1949497 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| DUZ89_RS09415 | 1949601..1950569 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| DUZ89_RS09420 | 1950725..1951378 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| DUZ89_RS09425 | 1951375..1951566 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DUZ89_RS09430 | 1951664..1951903 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DUZ89_RS09435 | 1952019..1953452 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T108368 NZ_CP031061:1948867-1948969 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT108368 NZ_CP031061:c1948975-1948831 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
