Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1978720..1978886 | Replicon | chromosome |
| Accession | NZ_CP030874 | ||
| Organism | Raoultella sp. X13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1978778..1978881 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1978720..1978886 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSD31_RS09400 | 1973858..1975918 | + | 2061 | WP_032724251.1 | oligopeptidase B | - |
| DSD31_RS09405 | 1975924..1976583 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| DSD31_RS09410 | 1976662..1976892 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| DSD31_RS09415 | 1977019..1977393 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| DSD31_RS09420 | 1977397..1978266 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| DSD31_RS09425 | 1978283..1978621 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 1978720..1978886 | - | 167 | - | - | Antitoxin |
| - | 1978778..1978881 | + | 104 | - | - | Toxin |
| DSD31_RS09430 | 1979191..1979334 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| DSD31_RS09435 | 1979455..1980426 | - | 972 | WP_205318372.1 | DUF535 family protein | - |
| DSD31_RS09440 | 1980569..1981213 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| DSD31_RS09445 | 1981219..1981410 | - | 192 | WP_004863962.1 | YebW family protein | - |
| DSD31_RS09450 | 1981504..1981743 | - | 240 | WP_004863958.1 | YebV family protein | - |
| DSD31_RS09455 | 1981858..1983291 | - | 1434 | WP_072046549.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T108123 NZ_CP030874:1978778-1978881 [Raoultella sp. X13]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT108123 NZ_CP030874:c1978886-1978720 [Raoultella sp. X13]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
