Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047680..2047914 | Replicon | chromosome |
| Accession | NZ_CP030783 | ||
| Organism | Escherichia albertii strain 2012EL-1823B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047682..2047784 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047680..2047914 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYN53_RS10480 | 2044074..2045531 | - | 1458 | WP_113650002.1 | Trk system potassium transporter TrkG | - |
| AYN53_RS25900 | 2045797..2045946 | + | 150 | WP_002462310.1 | hypothetical protein | - |
| - | 2047680..2047914 | + | 235 | - | - | Antitoxin |
| - | 2047682..2047784 | - | 103 | - | - | Toxin |
| AYN53_RS10495 | 2047942..2048283 | - | 342 | WP_113650003.1 | YebY family protein | - |
| AYN53_RS10500 | 2048296..2049168 | - | 873 | WP_113650004.1 | copper homeostasis membrane protein CopD | - |
| AYN53_RS10505 | 2049172..2049549 | - | 378 | WP_059267604.1 | CopC domain-containing protein YobA | - |
| AYN53_RS10510 | 2049688..2049918 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| AYN53_RS10515 | 2050084..2050296 | + | 213 | Protein_2011 | carbon-nitrogen hydrolase family protein | - |
| AYN53_RS10520 | 2050320..2050982 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 2039990..2048283 | 8293 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T108024 NZ_CP030783:c2047784-2047682 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 235 bp
>AT108024 NZ_CP030783:2047680-2047914 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGATTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGTTTTTTTAT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGATTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGTTTTTTTAT
