Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1723232..1723464 | Replicon | chromosome |
| Accession | NZ_CP030781 | ||
| Organism | Escherichia albertii strain 07-3866 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1723234..1723337 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1723232..1723464 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCF18_RS08590 | 1719638..1721095 | - | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| CCF18_RS08595 | 1721168..1721488 | - | 321 | WP_000086028.1 | hypothetical protein | - |
| - | 1723232..1723464 | + | 233 | - | - | Antitoxin |
| - | 1723234..1723337 | - | 104 | - | - | Toxin |
| CCF18_RS08605 | 1723494..1723835 | - | 342 | WP_000976487.1 | YebY family protein | - |
| CCF18_RS08610 | 1723848..1724720 | - | 873 | WP_044708630.1 | copper homeostasis membrane protein CopD | - |
| CCF18_RS08615 | 1724724..1725101 | - | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| CCF18_RS08620 | 1725240..1725470 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| CCF18_RS08625 | 1725636..1725848 | + | 213 | Protein_1662 | carbon-nitrogen hydrolase family protein | - |
| CCF18_RS08630 | 1725872..1726534 | + | 663 | WP_059273436.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 1714920..1723835 | 8915 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107984 NZ_CP030781:c1723337-1723234 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT107984 NZ_CP030781:1723232-1723464 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGACCACCGTCTTAAATGTTAGAAACCGCCCGTTCTGGTGAAAGAACTGTGACGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGACCACCGTCTTAAATGTTAGAAACCGCCCGTTCTGGTGAAAGAACTGTGACGGTTTTTT
