Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4862966..4863237 | Replicon | chromosome |
| Accession | NZ_CP030768 | ||
| Organism | Escherichia coli strain 2017C-4173W12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4863004..4863107 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4862966..4863237 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSB71_RS25450 | 4860123..4861562 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DSB71_RS25455 | 4861680..4861916 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DSB71_RS25460 | 4862021..4862212 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DSB71_RS25465 | 4862213..4862869 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 4862966..4863237 | + | 272 | - | - | Antitoxin |
| - | 4863004..4863107 | - | 104 | - | - | Toxin |
| DSB71_RS25470 | 4863265..4863606 | - | 342 | WP_000976481.1 | YebY family protein | - |
| DSB71_RS25475 | 4863619..4864491 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| DSB71_RS25480 | 4864495..4864869 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| DSB71_RS25485 | 4865008..4865238 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DSB71_RS25490 | 4865340..4865996 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| DSB71_RS25495 | 4866020..4866682 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4846415..4887024 | 40609 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107918 NZ_CP030768:c4863107-4863004 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT107918 NZ_CP030768:4862966-4863237 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
