Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1985101..1985372 | Replicon | chromosome |
| Accession | NZ_CP030767 | ||
| Organism | Escherichia coli strain 2017C-4109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1985139..1985242 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1985101..1985372 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSB73_RS11130 | 1982258..1983697 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DSB73_RS11135 | 1983815..1984051 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DSB73_RS11140 | 1984156..1984347 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DSB73_RS11145 | 1984348..1985004 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 1985101..1985372 | + | 272 | - | - | Antitoxin |
| - | 1985139..1985242 | - | 104 | - | - | Toxin |
| DSB73_RS11150 | 1985400..1985741 | - | 342 | WP_000976483.1 | YebY family protein | - |
| DSB73_RS11155 | 1985754..1986626 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| DSB73_RS11160 | 1986630..1987004 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| DSB73_RS11165 | 1987143..1987373 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DSB73_RS11170 | 1987475..1988131 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| DSB73_RS11175 | 1988155..1988817 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107865 NZ_CP030767:c1985242-1985139 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT107865 NZ_CP030767:1985101-1985372 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
