Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2547699..2547908 | Replicon | chromosome |
| Accession | NZ_CP030347 | ||
| Organism | Enterobacter hormaechei strain AR_038 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2547792..2547895 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2547699..2547908 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSB67_RS13945 | 2544236..2544898 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| CSB67_RS13950 | 2544923..2545573 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| CSB67_RS13955 | 2545685..2545915 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| CSB67_RS13960 | 2546053..2546424 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| CSB67_RS13965 | 2546426..2547295 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| CSB67_RS13970 | 2547312..2547650 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2547699..2547908 | - | 210 | - | - | Antitoxin |
| CSB67_RS13975 | 2547776..2547973 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2547792..2547895 | + | 104 | - | - | Toxin |
| CSB67_RS13980 | 2548019..2548999 | - | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| CSB67_RS13985 | 2549167..2549811 | + | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| CSB67_RS13990 | 2549846..2550085 | - | 240 | WP_003859885.1 | YebV family protein | - |
| CSB67_RS13995 | 2550192..2551640 | - | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2479349..2564553 | 85204 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107809 NZ_CP030347:2547792-2547895 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT107809 NZ_CP030347:c2547908-2547699 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
