Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1990533..1990804 | Replicon | chromosome |
| Accession | NZ_CP030331 | ||
| Organism | Escherichia coli strain AR_452 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1990663..1990766 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1990533..1990804 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC39_RS11105 | 1987088..1987750 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CSC39_RS11110 | 1987774..1988430 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CSC39_RS11115 | 1988532..1988762 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CSC39_RS11120 | 1988901..1989275 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CSC39_RS11125 | 1989279..1990151 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| CSC39_RS11130 | 1990164..1990505 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1990533..1990804 | - | 272 | - | - | Antitoxin |
| - | 1990663..1990766 | + | 104 | - | - | Toxin |
| CSC39_RS11135 | 1990901..1991557 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| CSC39_RS11140 | 1991558..1991749 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CSC39_RS11145 | 1991854..1992090 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CSC39_RS11150 | 1992208..1993647 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107726 NZ_CP030331:1990663-1990766 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT107726 NZ_CP030331:c1990804-1990533 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
