Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1923411..1923556 | Replicon | chromosome |
| Accession | NZ_CP030320 | ||
| Organism | Klebsiella pneumoniae strain 23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1923447..1923549 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1923411..1923556 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DRA87_RS09310 (DRA87_09595) | 1918541..1920601 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DRA87_RS09315 (DRA87_09600) | 1920605..1921264 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DRA87_RS09320 (DRA87_09605) | 1921343..1921573 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DRA87_RS09325 (DRA87_09610) | 1921686..1922060 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DRA87_RS09330 (DRA87_09615) | 1922064..1922933 | + | 870 | WP_048331959.1 | copper homeostasis membrane protein CopD | - |
| DRA87_RS09335 (DRA87_09620) | 1922950..1923288 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1923411..1923556 | - | 146 | - | - | Antitoxin |
| - | 1923447..1923549 | + | 103 | - | - | Toxin |
| DRA87_RS09340 | 1923925..1924068 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DRA87_RS09345 (DRA87_09630) | 1924173..1925141 | - | 969 | WP_074185275.1 | VirK/YbjX family protein | - |
| DRA87_RS09350 (DRA87_09635) | 1925298..1925951 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| DRA87_RS09355 (DRA87_09640) | 1925948..1926139 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DRA87_RS09360 (DRA87_09645) | 1926237..1926476 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DRA87_RS09365 (DRA87_09650) | 1926592..1928025 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T107654 NZ_CP030320:1923447-1923549 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT107654 NZ_CP030320:c1923556-1923411 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
