Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1952760..1952905 | Replicon | chromosome |
| Accession | NZ_CP030315 | ||
| Organism | Klebsiella pneumoniae strain 11305 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1952796..1952898 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1952760..1952905 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DRB03_RS09510 | 1947890..1949950 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DRB03_RS09515 | 1949954..1950613 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DRB03_RS09520 | 1950692..1950922 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DRB03_RS09525 | 1951035..1951409 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| DRB03_RS09530 | 1951413..1952282 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| DRB03_RS09535 | 1952299..1952637 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1952760..1952905 | - | 146 | - | - | Antitoxin |
| - | 1952796..1952898 | + | 103 | - | - | Toxin |
| DRB03_RS09540 | 1953274..1953417 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| DRB03_RS09545 | 1953522..1954490 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| DRB03_RS09550 | 1954647..1955300 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| DRB03_RS09555 | 1955297..1955488 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DRB03_RS09560 | 1955586..1955825 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DRB03_RS09565 | 1955941..1957374 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T107636 NZ_CP030315:1952796-1952898 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT107636 NZ_CP030315:c1952905-1952760 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
