Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1882605..1882750 | Replicon | chromosome |
| Accession | NZ_CP030313 | ||
| Organism | Klebsiella pneumoniae strain 11311 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1882641..1882743 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1882605..1882750 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DRA79_RS09050 (DRA79_09320) | 1877735..1879795 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DRA79_RS09055 (DRA79_09325) | 1879799..1880458 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DRA79_RS09060 (DRA79_09330) | 1880537..1880767 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DRA79_RS09065 (DRA79_09335) | 1880880..1881254 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DRA79_RS09070 (DRA79_09340) | 1881258..1882127 | + | 870 | WP_048331959.1 | copper homeostasis membrane protein CopD | - |
| DRA79_RS09075 (DRA79_09345) | 1882144..1882482 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1882605..1882750 | - | 146 | - | - | Antitoxin |
| - | 1882641..1882743 | + | 103 | - | - | Toxin |
| DRA79_RS09080 | 1883119..1883262 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DRA79_RS09085 (DRA79_09355) | 1883367..1884335 | - | 969 | WP_074185275.1 | VirK/YbjX family protein | - |
| DRA79_RS09090 (DRA79_09360) | 1884492..1885145 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| DRA79_RS09095 (DRA79_09365) | 1885142..1885333 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DRA79_RS09100 (DRA79_09370) | 1885431..1885670 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DRA79_RS09105 (DRA79_09375) | 1885786..1887219 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T107614 NZ_CP030313:1882641-1882743 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT107614 NZ_CP030313:c1882750-1882605 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
