Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1888203..1888348 | Replicon | chromosome |
| Accession | NZ_CP030302 | ||
| Organism | Klebsiella pneumoniae strain 205880 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1888239..1888341 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1888203..1888348 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DRB04_RS09080 (DRB04_09325) | 1883333..1885393 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DRB04_RS09085 (DRB04_09330) | 1885397..1886056 | - | 660 | WP_004145547.1 | exodeoxyribonuclease X | - |
| DRB04_RS09090 (DRB04_09335) | 1886135..1886365 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DRB04_RS09095 (DRB04_09340) | 1886478..1886852 | + | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| DRB04_RS09100 (DRB04_09345) | 1886856..1887725 | + | 870 | WP_065888599.1 | copper homeostasis membrane protein CopD | - |
| DRB04_RS09105 (DRB04_09350) | 1887742..1888080 | + | 339 | WP_065888598.1 | YebY family protein | - |
| - | 1888203..1888348 | - | 146 | - | - | Antitoxin |
| - | 1888239..1888341 | + | 103 | - | - | Toxin |
| DRB04_RS09110 | 1888716..1888859 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DRB04_RS09115 (DRB04_09360) | 1888964..1889932 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DRB04_RS09120 (DRB04_09365) | 1890089..1890742 | + | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| DRB04_RS09125 (DRB04_09370) | 1890739..1890930 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DRB04_RS09130 (DRB04_09375) | 1891028..1891267 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DRB04_RS09135 (DRB04_09380) | 1891383..1892816 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T107565 NZ_CP030302:1888239-1888341 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT107565 NZ_CP030302:c1888348-1888203 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
