Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2072722..2072867 Replicon chromosome
Accession NZ_CP030300
Organism Klebsiella pneumoniae strain 283747

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2072758..2072860 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2072722..2072867 (-)

Genomic Context


DRB02_RS10205DRB02_RS10220DRB02_RS10225DRB02_RS10230--DRB02_RS10245DRB02_RS10210DRB02_RS10215--DRB02_RS10235DRB02_RS10240DRB02_RS10250DRB02_RS10255DRB02_RS10260
Location: 2067852..2069912 (2061 bp)
Type: Others
Protein ID: WP_004151449.1
Location: 2070997..2071371 (375 bp)
Type: Others
Protein ID: WP_004151448.1
Location: 2071375..2072244 (870 bp)
Type: Others
Protein ID: WP_062955019.1
Location: 2072261..2072599 (339 bp)
Type: Others
Protein ID: WP_002911404.1
Location: 2072758..2072860 (103 bp)
Type: Toxin
Protein ID: -
Location: 2074608..2075261 (654 bp)
Type: Others
Protein ID: WP_004180432.1
Location: 2069916..2070575 (660 bp)
Type: Others
Protein ID: WP_002911407.1
Location: 2070654..2070884 (231 bp)
Type: Others
Protein ID: WP_002911406.1
Location: 2072722..2072867 (146 bp)
Type: Antitoxin
Protein ID: -
Location: 2073235..2073378 (144 bp)
Type: Others
Protein ID: WP_002911398.1
Location: 2073483..2074451 (969 bp)
Type: Others
Protein ID: WP_004151446.1
Location: 2075258..2075449 (192 bp)
Type: Others
Protein ID: WP_002911395.1
Location: 2075547..2075786 (240 bp)
Type: Others
Protein ID: WP_002911393.1
Location: 2075902..2077335 (1434 bp)
Type: Others
Protein ID: WP_004148845.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DRB02_RS10205 (DRB02_10540)2067852..2069912+2061WP_004151449.1oligopeptidase B-
DRB02_RS10210 (DRB02_10545)2069916..2070575-660WP_002911407.1exodeoxyribonuclease X-
DRB02_RS10215 (DRB02_10550)2070654..2070884-231WP_002911406.1DNA polymerase III subunit theta-
DRB02_RS10220 (DRB02_10555)2070997..2071371+375WP_004151448.1CopC domain-containing protein YobA-
DRB02_RS10225 (DRB02_10560)2071375..2072244+870WP_062955019.1copper homeostasis membrane protein CopD-
DRB02_RS10230 (DRB02_10565)2072261..2072599+339WP_002911404.1YebY family protein-
-2072722..2072867-146--Antitoxin
-2072758..2072860+103--Toxin
DRB02_RS102352073235..2073378-144WP_002911398.1Ecr family regulatory small membrane protein-
DRB02_RS10240 (DRB02_10575)2073483..2074451-969WP_004151446.1VirK/YbjX family protein-
DRB02_RS10245 (DRB02_10580)2074608..2075261+654WP_004180432.1protein-serine/threonine phosphatase-
DRB02_RS10250 (DRB02_10585)2075258..2075449-192WP_002911395.1YebW family protein-
DRB02_RS10255 (DRB02_10590)2075547..2075786-240WP_002911393.1YebV family protein-
DRB02_RS10260 (DRB02_10595)2075902..2077335-1434WP_004148845.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-

Associated MGEs


Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T107540 NZ_CP030300:2072758-2072860 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT107540 NZ_CP030300:c2072867-2072722 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References