Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014523..2014668 | Replicon | chromosome |
| Accession | NZ_CP030292 | ||
| Organism | Klebsiella pneumoniae strain 721005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014559..2014661 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014523..2014668 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DRB00_RS09865 (DRB00_10190) | 2009653..2011713 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DRB00_RS09870 (DRB00_10195) | 2011717..2012376 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DRB00_RS09875 (DRB00_10200) | 2012455..2012685 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DRB00_RS09880 (DRB00_10205) | 2012798..2013172 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DRB00_RS09885 (DRB00_10210) | 2013176..2014045 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| DRB00_RS09890 (DRB00_10215) | 2014062..2014400 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2014523..2014668 | - | 146 | - | - | Antitoxin |
| - | 2014559..2014661 | + | 103 | - | - | Toxin |
| DRB00_RS09895 | 2015036..2015179 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DRB00_RS09900 (DRB00_10225) | 2015284..2016252 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DRB00_RS09905 (DRB00_10230) | 2016409..2017062 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| DRB00_RS09910 (DRB00_10235) | 2017059..2017250 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DRB00_RS09915 (DRB00_10240) | 2017348..2017587 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DRB00_RS09920 (DRB00_10245) | 2017703..2019136 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T107491 NZ_CP030292:2014559-2014661 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT107491 NZ_CP030292:c2014668-2014523 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
