Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2017431..2017702 | Replicon | chromosome |
| Accession | NZ_CP030281 | ||
| Organism | Escherichia coli strain E308 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2017561..2017664 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2017431..2017702 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQW89_RS10620 | 2013986..2014648 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| DQW89_RS10625 | 2014672..2015328 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DQW89_RS10630 | 2015430..2015660 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DQW89_RS10635 | 2015799..2016173 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DQW89_RS10640 | 2016177..2017049 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| DQW89_RS10645 | 2017062..2017403 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2017431..2017702 | - | 272 | - | - | Antitoxin |
| - | 2017561..2017664 | + | 104 | - | - | Toxin |
| DQW89_RS10650 | 2017799..2018455 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| DQW89_RS10655 | 2018456..2018647 | - | 192 | WP_001338167.1 | YebW family protein | - |
| DQW89_RS10660 | 2018751..2018987 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| DQW89_RS10665 | 2019105..2020544 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107454 NZ_CP030281:2017561-2017664 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT107454 NZ_CP030281:c2017702-2017431 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
