Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 114494..114639 | Replicon | chromosome |
| Accession | NZ_CP030269 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain SC-7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 114530..114632 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 114494..114639 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQQ08_RS01445 | 109624..111684 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DQQ08_RS01450 | 111688..112347 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DQQ08_RS01455 | 112426..112656 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DQQ08_RS01460 | 112769..113143 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DQQ08_RS01465 | 113147..114016 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| DQQ08_RS01470 | 114033..114371 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 114494..114639 | - | 146 | - | - | Antitoxin |
| - | 114530..114632 | + | 103 | - | - | Toxin |
| DQQ08_RS28755 | 115007..115150 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DQQ08_RS01480 | 115255..116223 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| DQQ08_RS01485 | 116380..117033 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| DQQ08_RS01490 | 117030..117221 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DQQ08_RS01495 | 117319..117558 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DQQ08_RS01500 | 117674..119107 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T107426 NZ_CP030269:114530-114632 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT107426 NZ_CP030269:c114639-114494 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
