Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 1885718..1886361 Replicon chromosome
Accession NZ_CP030265
Organism Skermanella pratensis strain W17

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag DPR14_RS08515 Protein ID WP_158044759.1
Coordinates 1885718..1886107 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag DPR14_RS08520 Protein ID WP_158044760.1
Coordinates 1886107..1886361 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DPR14_RS08490 1882066..1882329 + 264 WP_158048055.1 light-harvesting protein -
DPR14_RS08495 1882339..1882530 + 192 WP_158044755.1 light-harvesting protein -
DPR14_RS08500 1882643..1883467 + 825 WP_158044756.1 photosynthetic reaction center subunit L -
DPR14_RS08505 1883478..1884452 + 975 WP_158044757.1 photosynthetic reaction center subunit M -
DPR14_RS08510 1884452..1885615 + 1164 WP_158044758.1 photosynthetic reaction center cytochrome c subunit -
DPR14_RS08515 1885718..1886107 - 390 WP_158044759.1 type II toxin-antitoxin system VapC family toxin Toxin
DPR14_RS08520 1886107..1886361 - 255 WP_158044760.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
DPR14_RS08525 1886448..1888526 - 2079 WP_158044761.1 prolyl oligopeptidase family serine peptidase -
DPR14_RS08530 1888682..1889062 + 381 WP_158048056.1 GxxExxY protein -
DPR14_RS08535 1889127..1890347 - 1221 WP_158048057.1 5-aminolevulinate synthase -
DPR14_RS08540 1890347..1891165 - 819 WP_158044762.1 DUF3623 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

Antitoxin VapB-like

(1-83)


Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 14116.23 Da        Isoelectric Point: 5.9081

>T107422 WP_158044759.1 NZ_CP030265:c1886107-1885718 [Skermanella pratensis]
MVIDTSAILAVLLGEPEAARISEEIGLGTPRLLSAANLLEASMVIETRKGEAAGRELDLFLYRARIEIVPVDQEQAEIAR
IAWRKYGKGRHPAGLNYGDCFAYALAKTRNAPLLFKGNDFSKTDIGQIN

Download         Length: 390 bp

>T107422 NZ_CP030265:c1886107-1885718 [Skermanella pratensis]
ATGGTCATCGACACCTCGGCTATCCTGGCCGTCCTGTTGGGAGAGCCCGAAGCCGCCCGGATATCGGAGGAAATCGGACT
TGGAACGCCCAGACTGCTGTCCGCGGCGAATCTCCTGGAAGCTTCGATGGTCATCGAGACCCGCAAAGGCGAGGCGGCGG
GACGTGAACTGGATCTCTTCCTCTACCGCGCCCGGATAGAAATCGTGCCTGTCGATCAGGAACAGGCTGAGATTGCACGC
ATAGCGTGGCGCAAATATGGGAAAGGTCGTCATCCCGCCGGATTGAATTACGGCGATTGTTTCGCGTACGCGCTAGCCAA
GACCCGGAATGCACCTTTGCTTTTCAAGGGGAACGACTTTTCAAAGACGGATATCGGCCAAATAAACTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9345.60 Da        Isoelectric Point: 5.1862

>AT107422 WP_158044760.1 NZ_CP030265:c1886361-1886107 [Skermanella pratensis]
MPLNIKDPSTEKIVRELAAVTGEAVTTAVRKAAEERLQRVRNDRFGRRLADELMEIGARCSALPDLDARSADEILGYDEH
GLPR

Download         Length: 255 bp

>AT107422 NZ_CP030265:c1886361-1886107 [Skermanella pratensis]
ATGCCGCTGAACATCAAGGATCCGAGTACGGAAAAGATCGTTCGCGAACTCGCCGCGGTTACGGGCGAAGCTGTGACTAC
AGCAGTTCGCAAAGCGGCCGAGGAGCGGCTTCAACGTGTTCGAAACGACAGGTTCGGCAGGCGACTGGCGGATGAATTGA
TGGAGATCGGCGCACGCTGCAGCGCTCTGCCGGACCTCGACGCTAGAAGTGCCGACGAGATCCTTGGCTATGATGAACAC
GGATTGCCACGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References