Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4052917..4053188 | Replicon | chromosome |
| Accession | NZ_CP030240 | ||
| Organism | Escherichia coli strain ER1709 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4052955..4053058 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4052917..4053188 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQ225_RS19750 | 4050074..4051513 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DQ225_RS19755 | 4051631..4051867 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DQ225_RS19760 | 4051972..4052163 | + | 192 | WP_000457842.1 | YebW family protein | - |
| DQ225_RS19765 | 4052164..4052820 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4052917..4053188 | + | 272 | - | - | Antitoxin |
| - | 4052955..4053058 | - | 104 | - | - | Toxin |
| DQ225_RS19770 | 4053216..4053557 | - | 342 | WP_000976476.1 | YebY family protein | - |
| DQ225_RS19775 | 4053570..4054442 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DQ225_RS19780 | 4054446..4054820 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DQ225_RS19785 | 4054959..4055189 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DQ225_RS19790 | 4055291..4055947 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DQ225_RS19795 | 4055971..4056633 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107392 NZ_CP030240:c4053058-4052955 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT107392 NZ_CP030240:4052917-4053188 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
