Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsxAB/MqsA(antitoxin)
Location 33774..34242 Replicon plasmid pSA20021456.3
Accession NZ_CP030222
Organism Salmonella enterica strain SA20021456

Toxin (Protein)


Gene name TsxA Uniprot ID -
Locus tag CHC34_RS27625 Protein ID WP_116779500.1
Coordinates 33774..34031 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name TsxB Uniprot ID -
Locus tag CHC34_RS27630 Protein ID WP_116779499.1
Coordinates 34018..34242 (+) Length 75 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CHC34_RS27605 29915..30175 + 261 WP_023233709.1 replication regulatory protein RepA -
CHC34_RS27610 30536..31369 + 834 WP_154808194.1 replication initiation protein -
CHC34_RS27615 32566..33081 + 516 WP_154808188.1 J domain-containing protein -
CHC34_RS27620 33235..33777 + 543 WP_116779501.1 hypothetical protein -
CHC34_RS27625 33774..34031 + 258 WP_116779500.1 hypothetical protein Toxin
CHC34_RS27630 34018..34242 + 225 WP_116779499.1 XRE family transcriptional regulator Antitoxin
CHC34_RS27635 34637..34966 + 330 WP_116779494.1 hypothetical protein -
CHC34_RS27930 35043..35180 + 138 WP_196214743.1 hypothetical protein -
CHC34_RS27640 35791..36147 + 357 WP_116779493.1 hypothetical protein -
CHC34_RS27645 36356..37396 - 1041 WP_154808189.1 IS481 family transposase -
CHC34_RS27650 37527..38444 - 918 WP_116779492.1 DNA-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..54448 54448


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 11040.99 Da        Isoelectric Point: 12.7294

>T107356 WP_116779500.1 NZ_CP030222:33774-34031 [Salmonella enterica]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKK

Download         Length: 258 bp

>T107356 NZ_CP030222:33774-34031 [Salmonella enterica]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 9631.07 Da        Isoelectric Point: 12.6692

>AT107356 WP_116779499.1 NZ_CP030222:34018-34242 [Salmonella enterica]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Download         Length: 225 bp

>AT107356 NZ_CP030222:34018-34242 [Salmonella enterica]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References