Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RHH
Location 39668..40224 Replicon plasmid pSA20021456.1
Accession NZ_CP030220
Organism Salmonella enterica strain SA20021456

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CHC34_RS26385 Protein ID WP_023223021.1
Coordinates 39668..39943 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CHC34_RS26390 Protein ID WP_023223020.1
Coordinates 39943..40224 (-) Length 94 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CHC34_RS26330 34990..35811 - 822 WP_023223032.1 thioredoxin domain-containing protein -
CHC34_RS26335 35953..36102 - 150 WP_023223031.1 hypothetical protein -
CHC34_RS26340 36111..36329 - 219 WP_023223030.1 DUF465 domain-containing protein -
CHC34_RS26345 36459..36665 - 207 WP_023223029.1 hemolysin expression modulator Hha -
CHC34_RS26350 36854..37225 - 372 Protein_32 hypothetical protein -
CHC34_RS26355 37219..37542 - 324 WP_023223027.1 PerC family transcriptional regulator -
CHC34_RS26360 37574..37918 - 345 WP_023223026.1 hypothetical protein -
CHC34_RS26365 38228..38452 + 225 WP_154808112.1 hypothetical protein -
CHC34_RS26370 38487..38747 - 261 WP_023223024.1 hypothetical protein -
CHC34_RS26375 38808..39047 - 240 WP_023223023.1 hypothetical protein -
CHC34_RS26380 39067..39630 - 564 WP_023223022.1 fertility inhibition protein FinO -
CHC34_RS26385 39668..39943 - 276 WP_023223021.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CHC34_RS26390 39943..40224 - 282 WP_023223020.1 ribbon-helix-helix protein, CopG family Antitoxin
CHC34_RS26395 40314..41054 - 741 WP_023223019.1 conjugal transfer pilus acetylase TraX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..159279 159279


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Hok/gef cell toxic protein

(8-48)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 13558.26 Da        Isoelectric Point: 5.5500

>T107353 WP_023223021.1 NZ_CP030220:c39943-39668 [Salmonella enterica]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFF

Download         Length: 276 bp

>T107353 NZ_CP030220:c39943-39668 [Salmonella enterica]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 13852.62 Da        Isoelectric Point: 5.5500

>AT107353 WP_023223020.1 NZ_CP030220:c40224-39943 [Salmonella enterica]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFF

Download         Length: 282 bp

>AT107353 NZ_CP030220:c40224-39943 [Salmonella enterica]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References