Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 15119..15644 Replicon plasmid pSA20051401.2
Accession NZ_CP030198
Organism Salmonella enterica strain SA20051401

Toxin (Protein)


Gene name ccdB Uniprot ID -
Locus tag CHD15_RS25985 Protein ID WP_114064533.1
Coordinates 15119..15424 (-) Length 102 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID A0A8E7KCT6
Locus tag CHD15_RS25990 Protein ID WP_031570335.1
Coordinates 15426..15644 (-) Length 73 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CHD15_RS27090 11611..11763 + 153 WP_001838496.1 hypothetical protein -
CHD15_RS25965 12376..13070 - 695 Protein_10 CPBP family intramembrane metalloprotease -
CHD15_RS25970 13574..14351 - 778 Protein_11 phage integrase family protein -
CHD15_RS25975 14386..14830 - 445 Protein_12 hypothetical protein -
CHD15_RS25980 14827..15117 - 291 WP_114064532.1 cytoplasmic protein -
CHD15_RS25985 15119..15424 - 306 WP_114064533.1 type II toxin-antitoxin system toxin CcdB Toxin
CHD15_RS25990 15426..15644 - 219 WP_031570335.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin
CHD15_RS25995 16388..16618 + 231 WP_114064534.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
CHD15_RS26000 16615..17031 + 417 WP_114064535.1 type II toxin-antitoxin system VapC family toxin -
CHD15_RS26005 17247..17428 - 182 Protein_18 hypothetical protein -
CHD15_RS26015 18000..19019 + 1020 WP_114064537.1 hypothetical protein -
CHD15_RS26020 19356..19676 + 321 WP_114064538.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..134274 134274


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(5-69)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 15030.03 Da        Isoelectric Point: 5.5500

>T107341 WP_114064533.1 NZ_CP030198:c15424-15119 [Salmonella enterica]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFF

Download         Length: 306 bp

>T107341 NZ_CP030198:c15424-15119 [Salmonella enterica]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 10761.91 Da        Isoelectric Point: 5.5500

>AT107341 WP_031570335.1 NZ_CP030198:c15644-15426 [Salmonella enterica]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Download         Length: 219 bp

>AT107341 NZ_CP030198:c15644-15426 [Salmonella enterica]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References