Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2037971..2038242 | Replicon | chromosome |
| Accession | NZ_CP030152 | ||
| Organism | Escherichia coli strain JSMCR1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2038101..2038204 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2037971..2038242 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSMCR1_RS09705 | 2034526..2035188 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| JSMCR1_RS09710 | 2035212..2035868 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JSMCR1_RS09715 | 2035970..2036200 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSMCR1_RS09720 | 2036339..2036713 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JSMCR1_RS09725 | 2036717..2037589 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JSMCR1_RS09730 | 2037602..2037943 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2037971..2038242 | - | 272 | - | - | Antitoxin |
| - | 2038101..2038204 | + | 104 | - | - | Toxin |
| JSMCR1_RS09735 | 2038339..2038995 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| JSMCR1_RS09740 | 2038996..2039187 | - | 192 | WP_001338167.1 | YebW family protein | - |
| JSMCR1_RS09745 | 2039292..2039528 | - | 237 | WP_001338166.1 | YebV family protein | - |
| JSMCR1_RS09750 | 2039646..2041085 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107227 NZ_CP030152:2038101-2038204 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT107227 NZ_CP030152:c2038242-2037971 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
