Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/-
Location 2179979..2180508 Replicon chromosome
Accession NZ_CP030093
Organism Mycobacterium tuberculosis strain RUS_B0

Toxin (Protein)


Gene name parE Uniprot ID G0TMR4
Locus tag DPM14_RS10415 Protein ID WP_003411124.1
Coordinates 2179979..2180296 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P9WJ74
Locus tag DPM14_RS10420 Protein ID WP_003411127.1
Coordinates 2180293..2180508 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DPM14_RS10385 2175000..2176076 + 1077 WP_003411110.1 hypothetical protein -
DPM14_RS10390 2176073..2176354 + 282 WP_003411112.1 hypothetical protein -
DPM14_RS10395 2176390..2177463 + 1074 WP_003901338.1 quinone-dependent dihydroorotate dehydrogenase -
DPM14_RS10400 2177468..2177998 - 531 WP_003411119.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
DPM14_RS10405 2178046..2179392 - 1347 WP_003411121.1 M20/M25/M40 family metallo-hydrolase -
DPM14_RS10415 2179979..2180296 - 318 WP_003411124.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DPM14_RS10420 2180293..2180508 - 216 WP_003411127.1 antitoxin ParD2 Antitoxin
DPM14_RS10425 2180763..2181821 + 1059 WP_003411129.1 hypothetical protein -
DPM14_RS10430 2181951..2182307 - 357 WP_003411130.1 hypothetical protein -
DPM14_RS10435 2182402..2183184 - 783 WP_003411131.1 cell wall synthesis protein Wag31 -
DPM14_RS10440 2183452..2183742 - 291 WP_003900476.1 YggT family protein -
DPM14_RS10445 2183904..2184560 - 657 WP_003411133.1 cell division protein SepF -
DPM14_RS10450 2184622..2185401 - 780 WP_015575160.1 YggS family pyridoxal phosphate-dependent enzyme -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Conserved hypothetical protein CHP02574, addiction module

(11-69)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12312.88 Da        Isoelectric Point: 6.4831

>T107069 WP_003411124.1 NZ_CP030093:c2180296-2179979 [Mycobacterium tuberculosis]
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE

Download         Length: 318 bp

>T107069 NZ_CP030093:c2180296-2179979 [Mycobacterium tuberculosis]
ATGACGCGCAGGCTGCGCGTCCATAACGGGGTTGAAGACGACCTATTCGAGGCGTTTTCCTACTACGCGGACGCGGCGCC
AGATCAGATCGATCGGCTTTACAACTTGTTTGTCGATGCCGTGACGAAGCGGATTCCGCAGGCTCCGAACGCGTTTGCGC
CGTTATTCAAGCACTATCGACACATCTACCTCCGGCCCTTCAGGTACTACGTTGCCTATCGGACGACCGACGAGGCTATC
GACATACTGGCTGTTCGGCACGGAATGGAGAACCCGAACGCGGTCGAGGCTGAGATCTCTGGCCGCACCTTCGAGTGA

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7880.70 Da        Isoelectric Point: 4.4055

>AT107069 WP_003411127.1 NZ_CP030093:c2180508-2180293 [Mycobacterium tuberculosis]
VVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDDFDKRIRARLG

Download         Length: 216 bp

>AT107069 NZ_CP030093:c2180508-2180293 [Mycobacterium tuberculosis]
GTGGTGGTCAACCGGGCATTGCTGGCGAGCGTCGACGCACTGTCGCGTGATGAGCAGATTGAGCTCGTCGAGCACATCAA
CGGAAACCTAGCCGAGGGCATGCATATCAGCGAGGCCAACCAGGCGCTCATCGAAGCGCGGGCCAATGACACCGACGATG
CTCATTGGTCCACCATTGATGACTTCGACAAGCGGATCCGCGCCCGGCTCGGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TMR4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAJ4

References