Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3860470..3860673 | Replicon | chromosome |
| Accession | NZ_CP030076 | ||
| Organism | Enterobacter hormaechei strain 20710 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3860563..3860666 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3860470..3860673 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DPF84_RS18985 | 3857007..3857669 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| DPF84_RS18990 | 3857694..3858344 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| DPF84_RS18995 | 3858456..3858686 | - | 231 | WP_112777795.1 | DNA polymerase III subunit theta | - |
| DPF84_RS19000 | 3858824..3859195 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| DPF84_RS19005 | 3859197..3860066 | + | 870 | WP_112777796.1 | copper homeostasis membrane protein CopD | - |
| DPF84_RS19010 | 3860083..3860421 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 3860470..3860673 | - | 204 | - | - | Antitoxin |
| - | 3860563..3860666 | + | 104 | - | - | Toxin |
| DPF84_RS19015 | 3860744..3861829 | - | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| DPF84_RS19020 | 3861798..3862070 | - | 273 | WP_023300430.1 | hypothetical protein | - |
| DPF84_RS19025 | 3862259..3862915 | + | 657 | WP_058672881.1 | DUF4145 domain-containing protein | - |
| DPF84_RS19030 | 3862947..3863165 | - | 219 | WP_058672880.1 | TraR/DksA family transcriptional regulator | - |
| DPF84_RS19035 | 3863232..3863768 | - | 537 | WP_058672879.1 | HNH endonuclease | - |
| DPF84_RS19040 | 3863765..3863965 | - | 201 | WP_047716558.1 | hypothetical protein | - |
| DPF84_RS19045 | 3863962..3864234 | - | 273 | WP_080399866.1 | DUF5405 family protein | - |
| DPF84_RS19050 | 3864231..3864449 | - | 219 | WP_032652770.1 | hypothetical protein | - |
| DPF84_RS19055 | 3864446..3864997 | - | 552 | WP_058672877.1 | phage N-6-adenine-methyltransferase | - |
| DPF84_RS28320 | 3864994..3865161 | - | 168 | WP_165592604.1 | hypothetical protein | - |
| DPF84_RS19060 | 3865158..3865586 | - | 429 | WP_058672876.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3782025..3907934 | 125909 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T107016 NZ_CP030076:3860563-3860666 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT107016 NZ_CP030076:c3860673-3860470 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
