Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3284443..3284588 | Replicon | chromosome |
| Accession | NZ_CP030070 | ||
| Organism | Klebsiella pneumoniae strain IA565 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3284450..3284552 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3284443..3284588 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DPF99_RS18195 | 3279975..3281408 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DPF99_RS18200 | 3281524..3281763 | + | 240 | WP_002911393.1 | YebV family protein | - |
| DPF99_RS18205 | 3281861..3282052 | + | 192 | WP_002911395.1 | YebW family protein | - |
| DPF99_RS18210 | 3282049..3282702 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| DPF99_RS18215 | 3282859..3283827 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DPF99_RS18220 | 3283932..3284075 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3284443..3284588 | + | 146 | - | - | Antitoxin |
| - | 3284450..3284552 | - | 103 | - | - | Toxin |
| DPF99_RS18230 | 3284711..3285049 | - | 339 | WP_032445207.1 | YebY family protein | - |
| DPF99_RS18235 | 3285066..3285935 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| DPF99_RS18240 | 3285939..3286313 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DPF99_RS18245 | 3286426..3286656 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DPF99_RS18250 | 3286735..3287394 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DPF99_RS18255 | 3287398..3289458 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T106979 NZ_CP030070:c3284552-3284450 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT106979 NZ_CP030070:3284443-3284588 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
