Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC(toxin) |
| Location | 463926..464584 | Replicon | chromosome |
| Accession | NZ_CP030053 | ||
| Organism | Bradyrhizobium guangzhouense strain CCBAU 51670 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | XH91_RS02305 | Protein ID | WP_128949090.1 |
| Coordinates | 463926..464330 (-) | Length | 135 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | XH91_RS02310 | Protein ID | WP_128949091.1 |
| Coordinates | 464330..464584 (-) | Length | 85 a.a. |
Genomic Context
Location: 462561..463196 (636 bp)
Type: Others
Protein ID: WP_164934305.1
Type: Others
Protein ID: WP_164934305.1
Location: 463371..463907 (537 bp)
Type: Others
Protein ID: WP_128949089.1
Type: Others
Protein ID: WP_128949089.1
Location: 464780..465967 (1188 bp)
Type: Others
Protein ID: WP_128949092.1
Type: Others
Protein ID: WP_128949092.1
Location: 466230..467198 (969 bp)
Type: Others
Protein ID: WP_128949093.1
Type: Others
Protein ID: WP_128949093.1
Location: 467413..468609 (1197 bp)
Type: Others
Protein ID: WP_128949094.1
Type: Others
Protein ID: WP_128949094.1
Location: 468614..469093 (480 bp)
Type: Others
Protein ID: WP_128949095.1
Type: Others
Protein ID: WP_128949095.1
Location: 459216..461786 (2571 bp)
Type: Others
Protein ID: WP_128949087.1
Type: Others
Protein ID: WP_128949087.1
Location: 461783..462505 (723 bp)
Type: Others
Protein ID: WP_128949088.1
Type: Others
Protein ID: WP_128949088.1
Location: 463926..464330 (405 bp)
Type: Toxin
Protein ID: WP_128949090.1
Type: Toxin
Protein ID: WP_128949090.1
Location: 464330..464584 (255 bp)
Type: Antitoxin
Protein ID: WP_128949091.1
Type: Antitoxin
Protein ID: WP_128949091.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XH91_RS02285 | 459216..461786 | - | 2571 | WP_128949087.1 | FtsX-like permease family protein | - |
| XH91_RS02290 | 461783..462505 | - | 723 | WP_128949088.1 | ABC transporter ATP-binding protein | - |
| XH91_RS02295 | 462561..463196 | + | 636 | WP_164934305.1 | arylesterase | - |
| XH91_RS02300 | 463371..463907 | + | 537 | WP_128949089.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| XH91_RS02305 | 463926..464330 | - | 405 | WP_128949090.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| XH91_RS02310 | 464330..464584 | - | 255 | WP_128949091.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
| XH91_RS02315 | 464780..465967 | + | 1188 | WP_128949092.1 | cell division protein ZapE | - |
| XH91_RS02320 | 466230..467198 | + | 969 | WP_128949093.1 | malate dehydrogenase | - |
| XH91_RS02325 | 467413..468609 | + | 1197 | WP_128949094.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| XH91_RS02330 | 468614..469093 | + | 480 | WP_128949095.1 | DUF1579 family protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 135 a.a. Molecular weight: 14532.52 Da Isoelectric Point: 4.9362
>T106955 WP_128949090.1 NZ_CP030053:c464330-463926 [Bradyrhizobium guangzhouense]
MVIDTSAIVAIAFNEDDAADMERLIVDDPVRLISAATVLEATMVIETRLGDAGGREFDLWLVKVGAEIVAVDAGQADAAR
RAWRRYGKGRHVASLNYGDCFSYALAVTRSEPLLFKGADFAKTDVSRSSVAPRR
MVIDTSAIVAIAFNEDDAADMERLIVDDPVRLISAATVLEATMVIETRLGDAGGREFDLWLVKVGAEIVAVDAGQADAAR
RAWRRYGKGRHVASLNYGDCFSYALAVTRSEPLLFKGADFAKTDVSRSSVAPRR
Download Length: 405 bp
>T106955 NZ_CP030053:c464330-463926 [Bradyrhizobium guangzhouense]
ATGGTAATCGATACGTCGGCGATCGTGGCAATCGCGTTCAACGAAGACGATGCAGCGGATATGGAGCGACTGATCGTGGA
CGATCCGGTCCGCCTGATCTCTGCAGCAACGGTGCTTGAAGCAACGATGGTGATCGAGACTCGGCTAGGTGATGCGGGCG
GGCGCGAGTTCGATCTGTGGCTCGTCAAGGTCGGCGCCGAGATCGTGGCAGTCGATGCCGGCCAGGCCGATGCAGCACGG
CGAGCTTGGCGGCGCTACGGGAAAGGGCGACATGTTGCATCGCTCAACTATGGGGATTGCTTCTCTTACGCGCTGGCTGT
GACGCGCAGCGAACCGCTGCTGTTCAAAGGCGCGGACTTTGCGAAGACCGACGTCAGCCGATCGAGCGTGGCGCCACGGC
GCTAG
ATGGTAATCGATACGTCGGCGATCGTGGCAATCGCGTTCAACGAAGACGATGCAGCGGATATGGAGCGACTGATCGTGGA
CGATCCGGTCCGCCTGATCTCTGCAGCAACGGTGCTTGAAGCAACGATGGTGATCGAGACTCGGCTAGGTGATGCGGGCG
GGCGCGAGTTCGATCTGTGGCTCGTCAAGGTCGGCGCCGAGATCGTGGCAGTCGATGCCGGCCAGGCCGATGCAGCACGG
CGAGCTTGGCGGCGCTACGGGAAAGGGCGACATGTTGCATCGCTCAACTATGGGGATTGCTTCTCTTACGCGCTGGCTGT
GACGCGCAGCGAACCGCTGCTGTTCAAAGGCGCGGACTTTGCGAAGACCGACGTCAGCCGATCGAGCGTGGCGCCACGGC
GCTAG
Antitoxin
Download Length: 85 a.a. Molecular weight: 9623.86 Da Isoelectric Point: 5.1974
>AT106955 WP_128949091.1 NZ_CP030053:c464584-464330 [Bradyrhizobium guangzhouense]
MALSIKDPETEQLARSLAQLTGENITTATKRAIEERLRRLGGQTHKDALLQDMAEIRKRWSEMRVLDDRTSEEIVGYDEN
GLPR
MALSIKDPETEQLARSLAQLTGENITTATKRAIEERLRRLGGQTHKDALLQDMAEIRKRWSEMRVLDDRTSEEIVGYDEN
GLPR
Download Length: 255 bp
>AT106955 NZ_CP030053:c464584-464330 [Bradyrhizobium guangzhouense]
ATGGCGCTTAGCATCAAGGACCCTGAAACGGAGCAGTTGGCGCGGAGTCTGGCGCAATTGACCGGCGAGAACATCACGAC
AGCGACCAAGCGGGCCATCGAGGAGCGGTTGCGTCGGCTCGGCGGTCAAACTCACAAAGACGCGCTGCTTCAAGACATGG
CCGAAATCAGGAAGCGCTGGAGCGAAATGCGCGTCCTGGATGACCGCACGTCTGAGGAGATCGTCGGATACGATGAGAAT
GGATTGCCGCGCTGA
ATGGCGCTTAGCATCAAGGACCCTGAAACGGAGCAGTTGGCGCGGAGTCTGGCGCAATTGACCGGCGAGAACATCACGAC
AGCGACCAAGCGGGCCATCGAGGAGCGGTTGCGTCGGCTCGGCGGTCAAACTCACAAAGACGCGCTGCTTCAAGACATGG
CCGAAATCAGGAAGCGCTGGAGCGAAATGCGCGTCCTGGATGACCGCACGTCTGAGGAGATCGTCGGATACGATGAGAAT
GGATTGCCGCGCTGA