Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 2535422..2536931 Replicon chromosome
Accession NZ_CP030037
Organism Bradyrhizobium sp. CCBAU 51753

Toxin (Protein)


Gene name rlegT Uniprot ID -
Locus tag XH93_RS11400 Protein ID WP_194473570.1
Coordinates 2536059..2536931 (+) Length 291 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID -
Locus tag XH93_RS11395 Protein ID WP_194473569.1
Coordinates 2535422..2536066 (+) Length 215 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XH93_RS11375 2531978..2532460 + 483 WP_194473565.1 DUF2384 domain-containing protein -
XH93_RS11380 2532556..2532807 + 252 WP_194473566.1 hypothetical protein -
XH93_RS11385 2532845..2533777 - 933 WP_194473567.1 helix-turn-helix transcriptional regulator -
XH93_RS11390 2534032..2534949 + 918 WP_194473568.1 hypothetical protein -
XH93_RS11395 2535422..2536066 + 645 WP_194473569.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
XH93_RS11400 2536059..2536931 + 873 WP_194473570.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
XH93_RS11405 2536943..2537188 + 246 WP_194473571.1 hypothetical protein -
XH93_RS11410 2537846..2538688 + 843 WP_194473572.1 electron transfer flavoprotein subunit beta/FixA family protein -
XH93_RS11415 2539004..2540344 - 1341 WP_194473573.1 DUF3422 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(38-257)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(11-57)


Sequences

Toxin        


Download         Length: 291 a.a.        Molecular weight: 32088.66 Da        Isoelectric Point: 6.1001

>T106892 WP_194473570.1 NZ_CP030037:2536059-2536931 [Bradyrhizobium sp. CCBAU 51753]
MGNLPKNVAASVRARLLTLSKERNEPFDLLLTRYVLERLLYRLGSTDYRNRFVLKGATLVATWVDNQFRPTRDLDLLGSG
DPDPDALLAIFKEIAAVDAADGVTFDPASFTVDRIRDENEYGGVRIKGNATLENARVRVVIDIAFGDAIEPGVQETDLPA
LLDFPAPKLRSYPRETVVAEKFQAMVALGLANSRLKDFYDVWVLIRSYKCEGDALARAIKATFARRKTDIPTALPDAFTE
DAGKKDQWAAFTRQVAVDPGSLTEVAKTLAEFLMPRAKETRAVKHGAAET

Download         Length: 873 bp

>T106892 NZ_CP030037:2536059-2536931 [Bradyrhizobium sp. CCBAU 51753]
ATGGGTAACCTACCCAAGAATGTCGCGGCCTCGGTTCGCGCGCGGCTGCTCACGCTCTCCAAGGAGCGCAACGAGCCCTT
CGACCTTCTCCTCACCCGCTACGTGCTGGAACGGCTGCTTTATCGTCTCGGCTCGACGGACTATCGCAATCGCTTCGTTC
TCAAGGGCGCGACGCTGGTCGCGACCTGGGTCGACAACCAGTTCCGGCCGACGCGCGACCTCGACCTTCTCGGCTCGGGC
GATCCCGACCCCGACGCGCTGTTGGCGATCTTCAAGGAGATCGCCGCCGTGGACGCCGCCGACGGCGTCACCTTCGACCC
GGCCAGCTTCACCGTCGACCGCATCCGCGACGAAAACGAATACGGCGGCGTCCGGATCAAGGGCAATGCCACGCTCGAAA
ACGCTCGCGTTCGCGTCGTGATCGATATCGCATTCGGCGACGCCATCGAGCCCGGCGTGCAGGAGACCGACCTGCCGGCG
TTGCTGGATTTTCCGGCGCCCAAGCTGCGCTCTTACCCCCGCGAAACCGTCGTCGCCGAGAAATTCCAGGCGATGGTCGC
GCTTGGCCTCGCGAATAGCCGCCTGAAGGACTTCTACGACGTCTGGGTGCTAATCCGATCCTACAAGTGCGAGGGCGACG
CGCTGGCCCGCGCCATCAAGGCGACGTTCGCGCGCCGCAAGACCGACATTCCGACCGCACTGCCGGACGCCTTCACCGAG
GACGCCGGCAAGAAGGACCAGTGGGCGGCGTTCACCAGGCAGGTCGCAGTCGACCCCGGCTCGTTGACGGAAGTCGCCAA
GACGCTCGCGGAGTTCCTGATGCCGCGCGCAAAGGAAACTCGCGCCGTGAAGCACGGGGCCGCGGAGACCTAG

Antitoxin


Download         Length: 215 a.a.        Molecular weight: 23521.29 Da        Isoelectric Point: 10.5694

>AT106892 WP_194473569.1 NZ_CP030037:2535422-2536066 [Bradyrhizobium sp. CCBAU 51753]
MAKPSSTQQDRAIELLKERGIARPSELATAGVTAATIARMKEKGLVVQLGRGLYQLPDAPIDTHHSLAEAAKRVPKAVVA
LTSALAFHDLTDTIPSMVWLAIGPKDRQPLPTNPPMQFVRFSPERLQEGVEIHTIEGCPVKIFSPAKTVVDLFRYRRSAG
TRYRHSTGLNLALEGLREALRTRKAKPSEIADFARKAGVWKAMQPYMEAMTANG

Download         Length: 645 bp

>AT106892 NZ_CP030037:2535422-2536066 [Bradyrhizobium sp. CCBAU 51753]
ATGGCCAAGCCGTCGTCGACCCAACAAGATCGCGCCATCGAACTCCTCAAGGAGCGCGGCATCGCGCGCCCTTCCGAGCT
TGCCACGGCGGGTGTCACGGCGGCGACCATCGCCCGCATGAAGGAAAAAGGCCTCGTCGTGCAACTCGGACGCGGCCTCT
ATCAACTGCCGGATGCTCCCATCGATACGCACCATTCCCTCGCCGAAGCCGCCAAGCGCGTGCCCAAAGCGGTCGTCGCG
CTCACCTCGGCGCTCGCGTTCCATGACCTGACCGATACCATTCCTTCGATGGTCTGGCTCGCCATTGGTCCCAAAGACCG
CCAGCCCCTTCCGACCAATCCGCCCATGCAGTTCGTTCGCTTCAGCCCGGAGCGGCTTCAGGAAGGCGTGGAGATTCATA
CGATCGAAGGTTGCCCGGTGAAGATCTTCAGCCCCGCCAAGACCGTCGTCGATCTTTTTCGCTACCGGCGGAGCGCCGGG
ACACGTTATCGTCACAGCACCGGCCTCAACCTCGCGCTCGAAGGCCTGCGCGAGGCCCTGCGAACCCGCAAGGCCAAGCC
CTCGGAGATCGCGGATTTTGCGCGCAAGGCCGGGGTTTGGAAGGCCATGCAGCCTTATATGGAAGCGATGACGGCCAATG
GGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References