Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2386466..2386737 | Replicon | chromosome |
| Accession | NZ_CP029981 | ||
| Organism | Escherichia coli strain 99-3165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2386596..2386699 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2386466..2386737 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4O06_RS13515 | 2383021..2383683 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| B4O06_RS13520 | 2383707..2384363 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| B4O06_RS13525 | 2384465..2384695 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B4O06_RS13530 | 2384834..2385208 | + | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| B4O06_RS13535 | 2385212..2386084 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| B4O06_RS13540 | 2386097..2386438 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2386466..2386737 | - | 272 | - | - | Antitoxin |
| - | 2386596..2386699 | + | 104 | - | - | Toxin |
| B4O06_RS13545 | 2386834..2387490 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| B4O06_RS13550 | 2387491..2387682 | - | 192 | WP_001338167.1 | YebW family protein | - |
| B4O06_RS13555 | 2387787..2388023 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| B4O06_RS13560 | 2388141..2389580 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106810 NZ_CP029981:2386596-2386699 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT106810 NZ_CP029981:c2386737-2386466 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
