Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2659187..2659458 | Replicon | chromosome |
| Accession | NZ_CP029973 | ||
| Organism | Escherichia coli strain 51008369SK1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2659225..2659328 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2659187..2659458 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DNQ41_RS13570 | 2656344..2657783 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DNQ41_RS13575 | 2657901..2658137 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DNQ41_RS13580 | 2658242..2658433 | + | 192 | WP_000457842.1 | YebW family protein | - |
| DNQ41_RS13585 | 2658434..2659090 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2659187..2659458 | + | 272 | - | - | Antitoxin |
| - | 2659225..2659328 | - | 104 | - | - | Toxin |
| DNQ41_RS13590 | 2659486..2659827 | - | 342 | WP_000976476.1 | YebY family protein | - |
| DNQ41_RS13595 | 2659840..2660712 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DNQ41_RS13600 | 2660716..2661090 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DNQ41_RS13605 | 2661229..2661459 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DNQ41_RS13610 | 2661561..2662217 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DNQ41_RS13615 | 2662241..2662903 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106766 NZ_CP029973:c2659328-2659225 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT106766 NZ_CP029973:2659187-2659458 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
