Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1748186..1748457 | Replicon | chromosome |
| Accession | NZ_CP029747 | ||
| Organism | Escherichia coli strain 2016C-3878 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1748317..1748419 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1748186..1748457 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEN53_RS09015 | 1744741..1745403 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BEN53_RS09020 | 1745427..1746083 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| BEN53_RS09025 | 1746185..1746415 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BEN53_RS09030 | 1746554..1746928 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| BEN53_RS09035 | 1746932..1747804 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| BEN53_RS09040 | 1747817..1748158 | + | 342 | WP_000976484.1 | YebY family protein | - |
| - | 1748186..1748457 | - | 272 | - | - | Antitoxin |
| - | 1748317..1748419 | + | 103 | - | - | Toxin |
| BEN53_RS09045 | 1748554..1749210 | + | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| BEN53_RS09050 | 1749211..1749402 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BEN53_RS09055 | 1749507..1749743 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BEN53_RS09060 | 1749861..1751300 | - | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T106676 NZ_CP029747:1748317-1748419 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT106676 NZ_CP029747:c1748457-1748186 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
