Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5201813..5202084 | Replicon | chromosome |
| Accession | NZ_CP029741 | ||
| Organism | Escherichia coli strain AR_0085 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5201851..5201954 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5201813..5202084 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM464_RS27170 | 5198970..5200409 | + | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM464_RS27175 | 5200527..5200763 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| AM464_RS27180 | 5200868..5201059 | + | 192 | WP_001338167.1 | YebW family protein | - |
| AM464_RS27185 | 5201060..5201716 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 5201813..5202084 | + | 272 | - | - | Antitoxin |
| - | 5201851..5201954 | - | 104 | - | - | Toxin |
| AM464_RS27190 | 5202112..5202453 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AM464_RS27195 | 5202466..5203338 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| AM464_RS27200 | 5203342..5203716 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM464_RS27205 | 5203855..5204085 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM464_RS27210 | 5204187..5204843 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM464_RS27215 | 5204867..5205529 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106621 NZ_CP029741:c5201954-5201851 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT106621 NZ_CP029741:5201813-5202084 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
