Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1336144..1336945 | Replicon | chromosome |
| Accession | NZ_CP029741 | ||
| Organism | Escherichia coli strain AR_0085 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | AM464_RS06905 | Protein ID | WP_096986228.1 |
| Coordinates | 1336568..1336945 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | AM464_RS06900 | Protein ID | WP_099441937.1 |
| Coordinates | 1336144..1336521 (+) | Length | 126 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM464_RS06865 | 1332189..1333073 | + | 885 | WP_110844013.1 | 50S ribosome-binding GTPase | - |
| AM464_RS06870 | 1333258..1334076 | + | 819 | WP_099441935.1 | DUF945 domain-containing protein | - |
| AM464_RS06875 | 1334178..1334651 | + | 474 | WP_103856377.1 | antirestriction protein | - |
| AM464_RS06885 | 1334663..1335139 | + | 477 | WP_001186164.1 | RadC family protein | - |
| AM464_RS06890 | 1335224..1335445 | + | 222 | WP_000706990.1 | DUF987 domain-containing protein | - |
| AM464_RS06895 | 1335462..1336106 | + | 645 | WP_099441936.1 | antitoxin of toxin-antitoxin stability system | - |
| AM464_RS06900 | 1336144..1336521 | + | 378 | WP_099441937.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| AM464_RS06905 | 1336568..1336945 | + | 378 | WP_096986228.1 | TA system toxin CbtA family protein | Toxin |
| AM464_RS06910 | 1336942..1337429 | + | 488 | Protein_1279 | hypothetical protein | - |
| AM464_RS06915 | 1337449..1337646 | + | 198 | WP_001349630.1 | DUF957 domain-containing protein | - |
| AM464_RS06920 | 1337743..1338609 | + | 867 | WP_099441939.1 | DUF4942 domain-containing protein | - |
| AM464_RS06925 | 1338678..1338941 | + | 264 | WP_099441940.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| AM464_RS06930 | 1338938..1339255 | + | 318 | WP_099441941.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AM464_RS06935 | 1339726..1339896 | + | 171 | Protein_1284 | IS110 family transposase | - |
| AM464_RS06940 | 1340707..1341690 | + | 984 | WP_001527653.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | dfrA1 / ant(3'')-Ia | kpsF / kpsE / kpsD / kpsU / kpsC / kpsS / neuE / neuC / neuA / neuB / neuD / kpsT / kpsM / gspM / gspL / gspK / gspJ / gspI / gspH / gspG / gspF / gspE / gspD / gspC | 1280860..1445877 | 165017 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14152.24 Da Isoelectric Point: 8.2976
>T106598 WP_096986228.1 NZ_CP029741:1336568-1336945 [Escherichia coli]
MKTFPDTHVRAASRCPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SASTRSQLISSIDILRARRATGLMTRSHYRMVNNITLGKHCEVKP
MKTFPDTHVRAASRCPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SASTRSQLISSIDILRARRATGLMTRSHYRMVNNITLGKHCEVKP
Download Length: 378 bp
>T106598 NZ_CP029741:1336568-1336945 [Escherichia coli]
ATGAAAACATTCCCCGACACACACGTACGGGCGGCATCGCGCTGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGGTTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAACAGCATATTG
AGGCAGGTATTTCACTGTGTGATGCGGTGAACTTTCTTGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCAGTACCCGTTCTCAGTTAATCAGCAGCATTGATATTCTCCGGGCCCGCCGGGCAACCGGGCTGATGACCCGCAG
CCACTACCGAATGGTGAACAACATCACCCTGGGTAAACACTGTGAGGTGAAACCATGA
ATGAAAACATTCCCCGACACACACGTACGGGCGGCATCGCGCTGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGGTTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAACAGCATATTG
AGGCAGGTATTTCACTGTGTGATGCGGTGAACTTTCTTGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCAGTACCCGTTCTCAGTTAATCAGCAGCATTGATATTCTCCGGGCCCGCCGGGCAACCGGGCTGATGACCCGCAG
CCACTACCGAATGGTGAACAACATCACCCTGGGTAAACACTGTGAGGTGAAACCATGA
Antitoxin
Download Length: 126 a.a. Molecular weight: 13714.49 Da Isoelectric Point: 5.9467
>AT106598 WP_099441937.1 NZ_CP029741:1336144-1336521 [Escherichia coli]
MSDTLTGTTHPDDNNNLPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRSRFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRHQHTVTLYAKGLTCEADTLGSCGYVYIAIYPTPATPGTTA
MSDTLTGTTHPDDNNNLPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRSRFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRHQHTVTLYAKGLTCEADTLGSCGYVYIAIYPTPATPGTTA
Download Length: 378 bp
>AT106598 NZ_CP029741:1336144-1336521 [Escherichia coli]
ATGTCAGACACACTCACCGGGACAACGCATCCCGACGACAATAACAATCTCCCCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTTGGTGCCCGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCAGACCGGGCCGGTATCAGAAGCCGGT
TCAGCGACGCAGATGCGTATCACCTGGACCAGGCTTTTCCGCTGCTGATGAAACAGCTGGAGCTCATGCTCACCAGCGGT
GAACTCAGTCCCCGCCATCAGCATACCGTCACACTGTATGCGAAAGGGCTGACCTGCGAGGCCGACACCCTCGGCAGTTG
TGGTTACGTGTATATCGCCATTTATCCGACACCGGCAACACCCGGAACCACCGCATAA
ATGTCAGACACACTCACCGGGACAACGCATCCCGACGACAATAACAATCTCCCCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTTGGTGCCCGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCAGACCGGGCCGGTATCAGAAGCCGGT
TCAGCGACGCAGATGCGTATCACCTGGACCAGGCTTTTCCGCTGCTGATGAAACAGCTGGAGCTCATGCTCACCAGCGGT
GAACTCAGTCCCCGCCATCAGCATACCGTCACACTGTATGCGAAAGGGCTGACCTGCGAGGCCGACACCCTCGGCAGTTG
TGGTTACGTGTATATCGCCATTTATCCGACACCGGCAACACCCGGAACCACCGCATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|