Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3143651..3143793 | Replicon | chromosome |
| Accession | NZ_CP029727 | ||
| Organism | Citrobacter sp. CRE-46 strain AR_0157 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3143686..3143789 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3143651..3143793 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN232_RS15390 | 3140099..3140761 | - | 663 | WP_038641401.1 | exodeoxyribonuclease X | - |
| AN232_RS15395 | 3140784..3141440 | - | 657 | WP_085048048.1 | carbon-nitrogen hydrolase family protein | - |
| AN232_RS15400 | 3141547..3141777 | - | 231 | WP_038641397.1 | DNA polymerase III subunit theta | - |
| AN232_RS15405 | 3141921..3142295 | + | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| AN232_RS15410 | 3142299..3143171 | + | 873 | WP_069324700.1 | copper homeostasis membrane protein CopD | - |
| AN232_RS15415 | 3143192..3143530 | + | 339 | WP_038641391.1 | YebY family protein | - |
| - | 3143651..3143793 | - | 143 | - | - | Antitoxin |
| - | 3143686..3143789 | + | 104 | - | - | Toxin |
| AN232_RS15420 | 3143867..3144952 | - | 1086 | WP_110497739.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| AN232_RS15425 | 3144921..3145193 | - | 273 | WP_032170291.1 | excisionase | - |
| AN232_RS15430 | 3145257..3145499 | - | 243 | WP_001237028.1 | DUF4060 family protein | - |
| AN232_RS15435 | 3145486..3145689 | - | 204 | WP_103285408.1 | hypothetical protein | - |
| AN232_RS15440 | 3145682..3146026 | - | 345 | WP_110497740.1 | hypothetical protein | - |
| AN232_RS15445 | 3146061..3147152 | - | 1092 | WP_110497741.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3074202..3250300 | 176098 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106550 NZ_CP029727:3143686-3143789 [Citrobacter sp. CRE-46]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT106550 NZ_CP029727:c3143793-3143651 [Citrobacter sp. CRE-46]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
