Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 890160..890369 | Replicon | chromosome |
| Accession | NZ_CP029716 | ||
| Organism | Enterobacter cloacae complex sp. strain AR_0154 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 890253..890356 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 890160..890369 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM401_RS04340 (AM401_04340) | 886697..887359 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| AM401_RS04345 (AM401_04345) | 887384..888034 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| AM401_RS04350 (AM401_04350) | 888146..888376 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AM401_RS04355 (AM401_04355) | 888514..888885 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| AM401_RS04360 (AM401_04360) | 888887..889756 | + | 870 | WP_110870475.1 | copper homeostasis membrane protein CopD | - |
| AM401_RS04365 (AM401_04365) | 889773..890111 | + | 339 | WP_110870477.1 | YebY family protein | - |
| - | 890160..890369 | - | 210 | - | - | Antitoxin |
| AM401_RS04370 (AM401_04370) | 890237..890434 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 890253..890356 | + | 104 | - | - | Toxin |
| AM401_RS04375 (AM401_04375) | 890480..891460 | - | 981 | WP_045345038.1 | VirK/YbjX family protein | - |
| AM401_RS04380 (AM401_04380) | 891628..892272 | + | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| AM401_RS04385 (AM401_04385) | 892307..892546 | - | 240 | WP_003859885.1 | YebV family protein | - |
| AM401_RS04390 (AM401_04390) | 892653..894101 | - | 1449 | WP_195764999.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106501 NZ_CP029716:890253-890356 [Enterobacter cloacae complex sp.]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT106501 NZ_CP029716:c890369-890160 [Enterobacter cloacae complex sp.]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
