106464

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1341648..1342167 Replicon chromosome
Accession NZ_CP029693
Organism Pseudomonas putida strain JBC17

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DKY63_RS05990 Protein ID WP_110963250.1
Coordinates 1341648..1341929 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag DKY63_RS05995 Protein ID WP_110963251.1
Coordinates 1341919..1342167 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DKY63_RS05960 1337027..1337791 - 765 WP_110963245.1 IclR family transcriptional regulator -
DKY63_RS05965 1337934..1338323 - 390 WP_110963246.1 RidA family protein -
DKY63_RS05970 1338354..1339148 - 795 WP_110963247.1 amino acid ABC transporter ATP-binding protein -
DKY63_RS05975 1339145..1339807 - 663 WP_110963248.1 amino acid ABC transporter permease -
DKY63_RS05980 1339817..1340479 - 663 WP_008011044.1 amino acid ABC transporter permease -
DKY63_RS05985 1340529..1341377 - 849 WP_110963249.1 transporter substrate-binding domain-containing protein -
DKY63_RS05990 1341648..1341929 - 282 WP_110963250.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DKY63_RS05995 1341919..1342167 - 249 WP_110963251.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DKY63_RS06000 1342486..1343640 + 1155 WP_110963252.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -
DKY63_RS06005 1343637..1345811 + 2175 WP_110963253.1 phage adsorption protein NrfB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10739.44 Da        Isoelectric Point: 10.3663

>T106464 WP_110963250.1 NZ_CP029693:c1341929-1341648 [Pseudomonas putida]
MTYELEFSEKAWKEWKKLGATVRDQFKKKLQERLVNPHVPGDRLNGLGNAYKIKLRSAGYRLVYRVVDEVLVITVIAVGK
RERGEVYTDAGSR

Download         Length: 282 bp

>T106464 NZ_CP029693:c1341929-1341648 [Pseudomonas putida]
ATGACCTATGAGCTGGAGTTTTCGGAAAAAGCCTGGAAAGAATGGAAGAAGCTCGGCGCAACCGTGAGGGATCAGTTCAA
GAAGAAGCTTCAGGAGCGGCTTGTCAATCCGCACGTACCGGGAGACCGGCTTAACGGACTCGGGAATGCCTACAAGATCA
AATTGCGCAGTGCCGGCTATCGATTGGTCTACAGGGTCGTCGATGAAGTTCTGGTCATCACCGTCATAGCGGTCGGAAAA
AGGGAGCGGGGTGAGGTCTACACGGACGCCGGCAGCCGATAA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9003.35 Da        Isoelectric Point: 4.4142

>AT106464 WP_110963251.1 NZ_CP029693:c1342167-1341919 [Pseudomonas putida]
MTHIVLSQVVASISELKRNPMGTVAAGGGESVAILNRNEPAFYCVPAREYEALMSRLEDLELIALCKERENDPTIKVSID
DL

Download         Length: 249 bp

>AT106464 NZ_CP029693:c1342167-1341919 [Pseudomonas putida]
ATGACACACATCGTGCTTTCGCAGGTCGTGGCAAGCATCTCTGAACTGAAAAGAAACCCTATGGGGACAGTGGCTGCGGG
CGGGGGAGAGTCCGTTGCAATTCTCAACCGTAACGAGCCTGCCTTCTATTGCGTCCCTGCCAGGGAATATGAGGCACTGA
TGAGCCGTCTGGAAGACCTGGAGCTGATTGCACTCTGCAAGGAGCGAGAAAACGATCCGACCATAAAGGTTTCCATTGAT
GACCTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References