Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1566325..1566596 | Replicon | chromosome |
| Accession | NZ_CP029692 | ||
| Organism | Escherichia coli strain SD134209 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1566455..1566558 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1566325..1566596 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DL800_RS09905 | 1562880..1563542 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DL800_RS09910 | 1563566..1564222 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DL800_RS09915 | 1564324..1564554 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DL800_RS09920 | 1564693..1565067 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| DL800_RS09925 | 1565071..1565943 | + | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| DL800_RS09930 | 1565956..1566297 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1566325..1566596 | - | 272 | - | - | Antitoxin |
| - | 1566455..1566558 | + | 104 | - | - | Toxin |
| DL800_RS09935 | 1566693..1567349 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| DL800_RS09940 | 1567350..1567541 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DL800_RS09945 | 1567646..1567882 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DL800_RS09950 | 1568000..1569439 | - | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106443 NZ_CP029692:1566455-1566558 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT106443 NZ_CP029692:c1566596-1566325 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
