Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 176823..176968 | Replicon | chromosome |
| Accession | NZ_CP029689 | ||
| Organism | Klebsiella pneumoniae strain 160111 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 176830..176932 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 176823..176968 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DL890_RS00890 | 172355..173788 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DL890_RS00895 | 173904..174143 | + | 240 | WP_002911393.1 | YebV family protein | - |
| DL890_RS00900 | 174241..174432 | + | 192 | WP_002911395.1 | YebW family protein | - |
| DL890_RS00905 | 174429..175082 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| DL890_RS00910 | 175239..176207 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DL890_RS30185 | 176312..176455 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 176823..176968 | + | 146 | - | - | Antitoxin |
| - | 176830..176932 | - | 103 | - | - | Toxin |
| DL890_RS00920 | 177091..177429 | - | 339 | WP_002911404.1 | YebY family protein | - |
| DL890_RS00925 | 177446..178315 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| DL890_RS00930 | 178319..178693 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DL890_RS00935 | 178806..179036 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DL890_RS00940 | 179115..179774 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DL890_RS00945 | 179778..181838 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T106416 NZ_CP029689:c176932-176830 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT106416 NZ_CP029689:176823-176968 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
